Gene
| Gene Model ID | pfu_aug1.0_10400.1_24739 |
|---|---|
| Locus | scaffold10400.1 : 28408 ... 34695 : - |
| To GenomeBrowser | scaffold10400.1:28408..34695 |
| Genes list of scaffold | scaffold10400.1 |
| Synonym | pfu_aug2.0_25.1_16737 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10400.1_24739.t1 | 6 | 1 | LRR_6 | 18 | 33 | 1.8e-06 | 27.4 | 0.2 | 420.0 | 1.5 |
| pfu_aug1.0_10400.1_24739.t1 | 4 | 1 | LRR_4 | 19 | 55 | 5.5e-13 | 48.2 | 2.3e-05 | 0.048 | 13.2 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 1 | LRR_1 | 19 | 38 | 8.2e-11 | 40.3 | 0.032 | 67.0 | 4.1 |
| pfu_aug1.0_10400.1_24739.t1 | 3 | 1 | LRR_8 | 20 | 54 | 3.2e-13 | 49.1 | 5.3e-05 | 0.11 | 12.2 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 2 | LRR_6 | 42 | 55 | 1.8e-06 | 27.4 | 0.0018 | 3.8 | 7.8 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 2 | LRR_1 | 45 | 54 | 8.2e-11 | 40.3 | 0.0046 | 9.7 | 6.6 |
| pfu_aug1.0_10400.1_24739.t1 | 3 | 2 | LRR_8 | 71 | 129 | 3.2e-13 | 49.1 | 5.4e-16 | 1.1e-12 | 47.4 |
| pfu_aug1.0_10400.1_24739.t1 | 4 | 2 | LRR_4 | 71 | 106 | 5.5e-13 | 48.2 | 7.5e-09 | 1.6e-05 | 24.4 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 3 | LRR_1 | 71 | 93 | 8.2e-11 | 40.3 | 4.4e-06 | 0.0093 | 15.8 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 3 | LRR_6 | 71 | 82 | 1.8e-06 | 27.4 | 0.0039 | 8.3 | 6.8 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 4 | LRR_6 | 93 | 106 | 1.8e-06 | 27.4 | 0.017 | 37.0 | 4.8 |
| pfu_aug1.0_10400.1_24739.t1 | 4 | 3 | LRR_4 | 95 | 132 | 5.5e-13 | 48.2 | 9.1e-10 | 1.9e-06 | 27.3 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 4 | LRR_1 | 96 | 108 | 8.2e-11 | 40.3 | 0.025 | 53.0 | 4.4 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 5 | LRR_6 | 116 | 129 | 1.8e-06 | 27.4 | 0.00023 | 0.49 | 10.6 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 5 | LRR_1 | 118 | 134 | 8.2e-11 | 40.3 | 0.00022 | 0.46 | 10.7 |
| pfu_aug1.0_10400.1_24739.t1 | 4 | 4 | LRR_4 | 152 | 165 | 5.5e-13 | 48.2 | 0.016 | 34.0 | 4.1 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 6 | LRR_1 | 152 | 162 | 8.2e-11 | 40.3 | 0.0098 | 21.0 | 5.6 |
| pfu_aug1.0_10400.1_24739.t1 | 6 | 6 | LRR_6 | 152 | 160 | 1.8e-06 | 27.4 | 0.099 | 210.0 | 2.4 |
| pfu_aug1.0_10400.1_24739.t1 | 3 | 3 | LRR_8 | 153 | 158 | 3.2e-13 | 49.1 | 0.95 | 2000.0 | -1.4 |
| pfu_aug1.0_10400.1_24739.t1 | 1 | 1 | TIR | 282 | 406 | 2.0e-19 | 69.4 | 1.2e-22 | 2.6e-19 | 69.0 |
| pfu_aug1.0_10400.1_24739.t1 | 1 | 1 | TIR_2 | 283 | 380 | 3.3e-09 | 36.8 | 3.0e-12 | 6.5e-09 | 35.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10400.1_24739.t1 | gi|260798166|ref|XP_002594071.1| | hypothetical protein BRAFLDRAFT_68489 [Branchiostoma floridae] | 8.0e-35 |
Transcript
| Transcript ID | pfu_aug1.0_10400.1_24739.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10400.1_24739.t1 atgcatgcgaataataattttctaccacatttacaatatatcgactattcgcagaaacttgaagaagcttatctttccaa gtgttatataaatgatattgacgattcctttttcctcacaacaaatttttcaattctggatctatcacataataatcttg gaaattaccttgcaaccgaggaggcgaataagcttttacaacgtcaagttaatctgaagtatcttaacctgtcaaagaat agattacgaagtgtaccaattaatctatttcaaaatcttaaaagtgtcaaagtattaaatatcagcgataaccatctgat agaagtaaacttcacaatgcgtggattaaagcagctaacaacacttgatttgtcaggcaatagactaatagctctttctg aaactactttagaagagatagacattttaggtcaagaatcgcattttaatcttacacttaacctctctggaaatccattt caatgttcatgcgatactttatatttccttaagtggattgaaagcaagaaagacagcgtcaagaacgtcattttgaaaag tttgaagaatgacagctgttcttttgcgaatcttaaggagaggagtctttcagaaatttcaacaataatattggaattgg agaaggtttgcttttctaaaagcgtagttatcgttcttagcgttatcttaataatcgtgtttttctttattataataata ggagtattccatagatacagatggaaactgagatacatttattacttaacacgtcgaagtcttagaggctatttcaatcg tcaaaacggaactgggaacagaagaaagtatttcgaattcgacgcttttataagttttgctgaggaagataggacttttg ccttcgaatgccttacgtctgaaattctagatcgacaaccgtccttaaatttatgctatcaccacatacattttttacca ggtagcggaattgctgaaaacattgtaaacgccgttcataacagcagaaagacaatctgcgttttgtccaagcatttcct ggtgtcggagtggtgtttatatgaattcaacatggcaaactttgagaagatctataatcgtggtgatgacaactctttga ttattctgatattgggacacgtatcgtatgacagaattccggtcaccatgatgtcttatttacaatccacatcctacata gaagttcctgaagagaacgatgaccgacgtgtgctttggaataacatatgtgatgcaattcacgatgattga |
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Protein
| Protein ID | pfu_aug1.0_10400.1_24739.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10400.1_24739.t1 MHANNNFLPHLQYIDYSQKLEEAYLSKCYINDIDDSFFLTTNFSILDLSHNNLGNYLATEEANKLLQRQVNLKYLNLSKN RLRSVPINLFQNLKSVKVLNISDNHLIEVNFTMRGLKQLTTLDLSGNRLIALSETTLEEIDILGQESHFNLTLNLSGNPF QCSCDTLYFLKWIESKKDSVKNVILKSLKNDSCSFANLKERSLSEISTIILELEKVCFSKSVVIVLSVILIIVFFFIIII GVFHRYRWKLRYIYYLTRRSLRGYFNRQNGTGNRRKYFEFDAFISFAEEDRTFAFECLTSEILDRQPSLNLCYHHIHFLP GSGIAENIVNAVHNSRKTICVLSKHFLVSEWCLYEFNMANFEKIYNRGDDNSLIILILGHVSYDRIPVTMMSYLQSTSYI EVPEENDDRRVLWNNICDAIHDD |
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