Gene
| Gene Model ID | pfu_aug1.0_1042.1_65756 |
|---|---|
| Locus | scaffold1042.1 : 31477 ... 46945 : - |
| To GenomeBrowser | scaffold1042.1:31477..46945 |
| Genes list of scaffold | scaffold1042.1 |
| Synonym | pfu_aug2.0_1153.1_11470 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1042.1_65756.t1 | 2 | 1 | zf-C3HC4_4 | 1 | 38 | 3.4e-14 | 52.4 | 1.6e-12 | 2.6e-09 | 36.7 |
| pfu_aug1.0_1042.1_65756.t1 | 4 | 1 | zf-C3HC4_2 | 1 | 38 | 5.8e-13 | 48.6 | 2.2e-11 | 3.5e-08 | 33.3 |
| pfu_aug1.0_1042.1_65756.t1 | 3 | 1 | zf-C3HC4 | 2 | 38 | 1.6e-13 | 50.0 | 1.7e-11 | 2.8e-08 | 33.2 |
| pfu_aug1.0_1042.1_65756.t1 | 2 | 1 | zf-C3HC4_3 | 2 | 40 | 6.7e-10 | 38.4 | 6.4e-09 | 1.0e-05 | 25.0 |
| pfu_aug1.0_1042.1_65756.t1 | 2 | 1 | zf-RING_UBOX | 5 | 36 | 9.4e-11 | 41.2 | 6.6e-11 | 1.1e-07 | 31.4 |
| pfu_aug1.0_1042.1_65756.t1 | 2 | 1 | zf-RING_2 | 6 | 39 | 3.3e-14 | 52.4 | 4.5e-11 | 7.5e-08 | 32.0 |
| pfu_aug1.0_1042.1_65756.t1 | 2 | 1 | zf-RING_5 | 6 | 40 | 2.8e-07 | 30.1 | 7.1e-09 | 1.2e-05 | 24.9 |
| pfu_aug1.0_1042.1_65756.t1 | 4 | 2 | zf-C3HC4_2 | 70 | 101 | 5.8e-13 | 48.6 | 0.45 | 740.0 | 0.2 |
| pfu_aug1.0_1042.1_65756.t1 | 2 | 2 | zf-RING_2 | 361 | 406 | 3.3e-14 | 52.4 | 7.0e-12 | 1.2e-08 | 34.6 |
| pfu_aug1.0_1042.1_65756.t1 | 2 | 2 | zf-C3HC4_3 | 361 | 407 | 6.7e-10 | 38.4 | 7.8e-10 | 1.3e-06 | 27.9 |
| pfu_aug1.0_1042.1_65756.t1 | 2 | 2 | zf-C3HC4_4 | 363 | 405 | 3.4e-14 | 52.4 | 1.7e-10 | 2.8e-07 | 30.3 |
| pfu_aug1.0_1042.1_65756.t1 | 3 | 2 | zf-C3HC4 | 363 | 405 | 1.6e-13 | 50.0 | 6.1e-11 | 1.0e-07 | 31.4 |
| pfu_aug1.0_1042.1_65756.t1 | 4 | 3 | zf-C3HC4_2 | 363 | 405 | 5.8e-13 | 48.6 | 2.3e-10 | 3.7e-07 | 30.0 |
| pfu_aug1.0_1042.1_65756.t1 | 2 | 2 | zf-RING_UBOX | 363 | 403 | 9.4e-11 | 41.2 | 1.2e-08 | 1.9e-05 | 24.2 |
| pfu_aug1.0_1042.1_65756.t1 | 2 | 2 | zf-RING_5 | 363 | 407 | 2.8e-07 | 30.1 | 2.7e-07 | 0.00045 | 19.8 |
| pfu_aug1.0_1042.1_65756.t1 | 3 | 3 | zf-C3HC4 | 437 | 468 | 1.6e-13 | 50.0 | 0.45 | 740.0 | -0.1 |
| pfu_aug1.0_1042.1_65756.t1 | 4 | 4 | zf-C3HC4_2 | 444 | 467 | 5.8e-13 | 48.6 | 0.71 | 1200.0 | -0.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1042.1_65756.t1 | gi|260833176|ref|XP_002611533.1| | hypothetical protein BRAFLDRAFT_63830 [Branchiostoma floridae] | 6.0e-11 |
Transcript
| Transcript ID | pfu_aug1.0_1042.1_65756.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1042.1_65756.t1 atggatacattcaagaatcccaaactattaatatgtggacatacgttttgtcggaaatgcatcgatgacatcataaaatc tcaacaagaaaaggatattaaatgtcccctgtgtagaaagataacaaatcgtccaaacaatggagcgagaaatttagttg ataattattttgttacggatcggagatataccactcaaatcttaaggtgcaaagaatgtaacaaaatttccaaaaataag tgttgcaaatgttgtggcaagtacctttgtgataaatgcatcttttcacatactgagaagcacattactatggaggaaag gaaacgccaatgtgatccaacaaaacatttagagagacctttacatggagtgggattgtgcgaaattgaggaaatgtcgg aagcatatcgttccaaattcagtttcgagcttgtgaaaaggatagtggtccctaacttgttctggaatgaaaatgagcac gaaattaacattaatatatcatccatatcatgttttgatggtaaaaactgcattgttgcaccaaacggagatgaacttgt tctcatttatgacaaagatgggaatgaaatgttacgagatatcatacattttcgagtggtagacattgcaatgggtctca aaggttatccattaataatcgaaaatggtacaagcacgatatacgagtacagatttggagcaaaccgaaaactctttcgt agtcagcctcttctaccgtatgccatttcaagtctcaatgatggaaaagtggtgcttgtaggaacagttagtactcgtac acttcttgaagcggaattccagaggcgtggcgcaatgcgtgtctacaaatataatggccagatagtaagtgaagcattga gggaacatgaggaataccttttcgactttccttttcacgtttgtgtgagcttggagaacaatgacatttacaactgtcac atccggttacttccatttcggaagacatatatatttgccttggtcaatattttcagagcaaatcagcaagtaaatttctt tttcatctgggcctacaaagcttcctcatataaaatgtcggatacatgttctgtttgtcaagatatttttgacaacccca agtttttacattgcggacacacgttctgttgtaaatgtatagactcaatgctgggatctatcaaaggaccatacaaaatc aagtgtccactttgtcgtaaagtcacttactgccgggaacgagggacaggggatttaatggacaatttcttcgttccaga cagaatccattctacgagaatcttaacgtgtaaggaatgtagaggtatctccgaaattacaacttgtgatcgttgtcaag tgttattgtgtgaacactgcatgtttaatcatatgaaaacaaagtgtggaaaggagtggcaagatggcgggttagcctgt attgatacaaacagagaggaagaggagaatgccgatgaagatgatgtcgggctagaagaacgactaatgaccgagatgat tcaaacaaagtattatttcaagcttgagcgtagaatagtgattccgaatgattattacgattcaaatttgaatttaaacc tgtcttcaatggcttgttttaacgagaatcaaatcataacagcaccaaattgtgactcattagtacttatttacaatgat aaaggtgaggaactactgagacagtttatacccatgagggtcataggcctttcttcaggcattgagggctatcctttact aatacaaaataatcattacgctgtgtataaatattgttatggtaacttagaaacaatgtttagcacaccaacaatttcac cgagagcgatttccagctttaacaatggccgaatagtaattgtcggaacaaaattaacccacacagaattgggtgccgag gatacacctgatgctacattttgtatatatgaatataatggagctgttgtcgtagacttgtccacagagcagcaagaaca tcacctagaacatccgaccagcgtgtgtgtgaacatgaccaacaatgacttcttcgtcggtgataagatgaagaagcaag tagtacgcttcaaagaggacggaagttacgtatcgtcgtacaaaaggtccgatttactggatagttttcttggcatccct gtgccaaccgcgttgataaataacagtgcaatattcccattgtcgttgtcttactgtcagacaaacgatcaactatacgc ttcctttcttacagcagtggagcgagatacgcatggcaccttcagtctctacatctacgccttggaggcttcgaactttc attgtcccaacaagaacaatacgtccgtcattcaggctcgctatatcaaacggtgtgtgccgcagaatttgcaggtttta tttaaggaaatgatgtcacactccttacatctgaaaacttttgtggaacatcttcggtctgatgcataa |
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Protein
| Protein ID | pfu_aug1.0_1042.1_65756.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1042.1_65756.t1 MDTFKNPKLLICGHTFCRKCIDDIIKSQQEKDIKCPLCRKITNRPNNGARNLVDNYFVTDRRYTTQILRCKECNKISKNK CCKCCGKYLCDKCIFSHTEKHITMEERKRQCDPTKHLERPLHGVGLCEIEEMSEAYRSKFSFELVKRIVVPNLFWNENEH EININISSISCFDGKNCIVAPNGDELVLIYDKDGNEMLRDIIHFRVVDIAMGLKGYPLIIENGTSTIYEYRFGANRKLFR SQPLLPYAISSLNDGKVVLVGTVSTRTLLEAEFQRRGAMRVYKYNGQIVSEALREHEEYLFDFPFHVCVSLENNDIYNCH IRLLPFRKTYIFALVNIFRANQQVNFFFIWAYKASSYKMSDTCSVCQDIFDNPKFLHCGHTFCCKCIDSMLGSIKGPYKI KCPLCRKVTYCRERGTGDLMDNFFVPDRIHSTRILTCKECRGISEITTCDRCQVLLCEHCMFNHMKTKCGKEWQDGGLAC IDTNREEEENADEDDVGLEERLMTEMIQTKYYFKLERRIVIPNDYYDSNLNLNLSSMACFNENQIITAPNCDSLVLIYND KGEELLRQFIPMRVIGLSSGIEGYPLLIQNNHYAVYKYCYGNLETMFSTPTISPRAISSFNNGRIVIVGTKLTHTELGAE DTPDATFCIYEYNGAVVVDLSTEQQEHHLEHPTSVCVNMTNNDFFVGDKMKKQVVRFKEDGSYVSSYKRSDLLDSFLGIP VPTALINNSAIFPLSLSYCQTNDQLYASFLTAVERDTHGTFSLYIYALEASNFHCPNKNNTSVIQARYIKRCVPQNLQVL FKEMMSHSLHLKTFVEHLRSDA |
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