Gene
| Gene Model ID | pfu_aug1.0_1042.1_65757 |
|---|---|
| Locus | scaffold1042.1 : 49426 ... 56275 : + |
| To GenomeBrowser | scaffold1042.1:49426..56275 |
| Genes list of scaffold | scaffold1042.1 |
| Synonym | pfu_aug2.0_2595.1_18868 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1042.1_65757.t1 | 2 | 1 | zf-RING_2 | 4 | 48 | 5.4e-09 | 35.7 | 3.3e-12 | 5.4e-09 | 35.7 |
| pfu_aug1.0_1042.1_65757.t1 | 1 | 1 | zf-C3HC4 | 5 | 47 | 5.5e-08 | 32.3 | 3.4e-11 | 5.5e-08 | 32.3 |
| pfu_aug1.0_1042.1_65757.t1 | 2 | 1 | zf-C3HC4_2 | 5 | 47 | 1.2e-07 | 31.5 | 7.5e-11 | 1.2e-07 | 31.5 |
| pfu_aug1.0_1042.1_65757.t1 | 1 | 1 | zf-C3HC4_4 | 5 | 47 | 1.4e-07 | 31.2 | 8.4e-11 | 1.4e-07 | 31.2 |
| pfu_aug1.0_1042.1_65757.t1 | 1 | 1 | zf-RING_UBOX | 5 | 45 | 5.4e-06 | 26.0 | 3.3e-09 | 5.4e-06 | 26.0 |
| pfu_aug1.0_1042.1_65757.t1 | 2 | 2 | zf-RING_2 | 84 | 110 | 5.4e-09 | 35.7 | 0.74 | 1200.0 | -0.7 |
| pfu_aug1.0_1042.1_65757.t1 | 2 | 2 | zf-C3HC4_2 | 89 | 109 | 1.2e-07 | 31.5 | 0.28 | 460.0 | 0.9 |
| pfu_aug1.0_1042.1_65757.t1 | 4 | 1 | NHL | 258 | 271 | 3.9e-09 | 36.0 | 0.84 | 1400.0 | -0.5 |
| pfu_aug1.0_1042.1_65757.t1 | 4 | 2 | NHL | 315 | 341 | 3.9e-09 | 36.0 | 1.1e-06 | 0.0018 | 18.1 |
| pfu_aug1.0_1042.1_65757.t1 | 4 | 3 | NHL | 376 | 390 | 3.9e-09 | 36.0 | 0.28 | 460.0 | 1.0 |
| pfu_aug1.0_1042.1_65757.t1 | 4 | 4 | NHL | 423 | 438 | 3.9e-09 | 36.0 | 0.00021 | 0.34 | 10.9 |
Transcript
| Transcript ID | pfu_aug1.0_1042.1_65757.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1042.1_65757.t1 atgtcggatatatgttccgtgtgtcaagatgtttttgacaaccccaagtttttacattgtggacatacattctgttgtaa atgcatagacgccatgctgggaacaacgaaaggaccatacaaaatcaagtgtccactttgtcgtaaagtcacaaactgcc ggaaacgagggacaggtgatttaatggacaacttctttgtcccagacagaatccattctacgaggatcttaacatgcaca gaatgtagtggtatctcagaacttacaacttgtgatcgttgtcaaatactattgtgtgaacaatgcatgtttactcatat gaaaacaaagtgtggtaaggagtggcaagatggcgggttagcctgtattgatacaaacagagaggacgaggaaaatgcgg atgaagatgatgttgggctagaagagcgacttatgtccgagatgattcagacgaagtactatttcgagcttgagcgtaga atagtgattccgaatgattataacgattcaaatttgaatttaaacctgtcttcacttgcttgtttgaacgagaatcagat cataacagcgccgaatcgggaatcttttgtgtttatattcaatgataaaggtgaagaactattgagagattttttaccga taaggtatggggtcattggcatttgttcaggtattgagggataccctttacttatacagaaaaatcatttctctgtgtat aaatattgttacgggagcatcgaaacaatgtttagtacgccatcgatttcaccaagagcgatttccagctttaacaatgg caggatagttattgtgggaatgaaactgattcacacggaacggggtgccgaaagtacgtctgatgcaagcttttgtatat ttgaatataatggcgctgttgtcgcagacctctccacagaacacccagattatttcatagaacacccgacaagcgtctgt gtgaacatgaccaacaatgacttcttcgttggcgataagatgaagaagcaagtcctgtgcttcaaagaagacggaagtta cgaatcatcatacaaacgatccgatttaccggatagaattctgggtatccctgtgccaacagccttgataaataacagta caatgtttcctttgtccctggcgtactgtacaacaaacgatctactatacgcttcctttcttacagcagtggagcgaggt atttatgtgctttcgtcttctttggatctactaggacttttcagttctgccgaaagtgttggaattcctgcgggattatc ttgtgacgacagagggagactctatgttggagacggaacggacggaattatcagggtttataaattgtcagtgtatctaa acagagtctga |
|
Protein
| Protein ID | pfu_aug1.0_1042.1_65757.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1042.1_65757.t1 MSDICSVCQDVFDNPKFLHCGHTFCCKCIDAMLGTTKGPYKIKCPLCRKVTNCRKRGTGDLMDNFFVPDRIHSTRILTCT ECSGISELTTCDRCQILLCEQCMFTHMKTKCGKEWQDGGLACIDTNREDEENADEDDVGLEERLMSEMIQTKYYFELERR IVIPNDYNDSNLNLNLSSLACLNENQIITAPNRESFVFIFNDKGEELLRDFLPIRYGVIGICSGIEGYPLLIQKNHFSVY KYCYGSIETMFSTPSISPRAISSFNNGRIVIVGMKLIHTERGAESTSDASFCIFEYNGAVVADLSTEHPDYFIEHPTSVC VNMTNNDFFVGDKMKKQVLCFKEDGSYESSYKRSDLPDRILGIPVPTALINNSTMFPLSLAYCTTNDLLYASFLTAVERG IYVLSSSLDLLGLFSSAESVGIPAGLSCDDRGRLYVGDGTDGIIRVYKLSVYLNRV |
|