Gene
| Gene Model ID | pfu_aug1.0_10452.1_60775 |
|---|---|
| Locus | scaffold10452.1 : 1 ... 935 : - |
| To GenomeBrowser | scaffold10452.1:1..935 |
| Genes list of scaffold | scaffold10452.1 |
| Synonym | pfu_aug2.0_1072.1_08149 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10452.1_60775.t1 | 1 | 1 | BTB_2 | 2 | 83 | 1.7e-22 | 79.4 | 6.1e-26 | 3.0e-22 | 78.6 |
| pfu_aug1.0_10452.1_60775.t1 | 2 | 1 | Ion_trans | 125 | 142 | 7.7e-18 | 64.4 | 0.11 | 550.0 | -0.4 |
| pfu_aug1.0_10452.1_60775.t1 | 2 | 2 | Ion_trans | 181 | 294 | 7.7e-18 | 64.4 | 1.5e-21 | 7.7e-18 | 64.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10452.1_60775.t1 | gi|260805172|ref|XP_002597461.1| | hypothetical protein BRAFLDRAFT_174869 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10452.1_60775.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10452.1_60775.t1 atgaagttcgaaacacagctgcgaacgctgaatcggctgccgaacactttacttggagatcctcataaaagagagaaatt ttgggaccccaccaggaatgagtatttcttcgacagacatcgcccgagtttccccgcaattttgtatttctaccaaagcg ggggtcgcttagaacgtccgatcgaggtgccgagtgatatatttctgaacgaactccagttctttgaaatgggaaagtct gccatcaatttgtttaaacaaaaggaaggatatattattgaaaacgaagtcatcattttacctaagggtaacatccagag aaagatttgggagctcttcgaaataccagactcatcgcttgctgcgaaggttttagcttttgtttctgttttgtttattt tggtgtctgttgtagtgttttgtgttgagacacttccagccttctccaactctcagtgcattaatgtcacagtaggttac ggctataatggaacagaagtcttaaagcaggtacccaacttcaccgactttttctttataactgaaagcatttgcattgc atggtttgtttttgagttaataacaagatttttatcttctccctctaagtttctcttcgttaagagcttcgtcaattgga ttgattttctggccattataccctatatgctgtttatgggcatttatctcgtgacgaaggaatgtagtgcctctagcggt ggacttttgtccgtacttcgtgtacttagagttaccagaatcttgaaacttagcaaacattctgaaggactgaagatatt tggtaaaactatgcaatcgagcgtcaccgaactttttatgtttgcccttttcctcgggatcggggtcatcatttatgccg gtgccatttattatgcagaactcc |
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Protein
| Protein ID | pfu_aug1.0_10452.1_60775.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10452.1_60775.t1 MKFETQLRTLNRLPNTLLGDPHKREKFWDPTRNEYFFDRHRPSFPAILYFYQSGGRLERPIEVPSDIFLNELQFFEMGKS AINLFKQKEGYIIENEVIILPKGNIQRKIWELFEIPDSSLAAKVLAFVSVLFILVSVVVFCVETLPAFSNSQCINVTVGY GYNGTEVLKQVPNFTDFFFITESICIAWFVFELITRFLSSPSKFLFVKSFVNWIDFLAIIPYMLFMGIYLVTKECSASSG GLLSVLRVLRVTRILKLSKHSEGLKIFGKTMQSSVTELFMFALFLGIGVIIYAGAIYYAEL |
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