Gene
| Gene Model ID | pfu_aug1.0_10456.1_02919 |
|---|---|
| Locus | scaffold10456.1 : 6209 ... 16590 : - |
| To GenomeBrowser | scaffold10456.1:6209..16590 |
| Genes list of scaffold | scaffold10456.1 |
| Synonym | pfu_aug2.0_3503.1_12475 |
Manual annotation
| Study field | signal molecules |
|---|---|
| Gene name | nicastrin |
| Description | Blast hits to various organisms nicastrin. Best hits to Drosophila melanogaster nicastrin |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10456.1_02919.t1 | 2 | 1 | Nicastrin | 218 | 277 | 1.1e-25 | 90.2 | 1.5e-15 | 2.2e-11 | 43.4 |
| pfu_aug1.0_10456.1_02919.t1 | 2 | 2 | Nicastrin | 292 | 378 | 1.1e-25 | 90.2 | 2.4e-16 | 3.6e-12 | 46.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10456.1_02919.t1 | gi|326935894|ref|XP_003214000.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_10456.1_02919.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10456.1_02919.t1 atgcacttacatttcagcgggaataaagggggatgtaggagttgtgcattacatacagaattcctcggattttgattggt tacttcagaggggtcctgataaaccatacgctgtgttattacactcagaagatttcagcccggaaagagtaagacagcta tggtattctgggaaagtgaacggcatcatggtcatacacactacagatgacacagatctcacacctttaccctccacttt ctctcctgacaacacctgtccaggggatccatatggtctttaccatggcgacagtacctatggtaactgtaaacgacagg aatggaatccacagggaaacggcttgttttatgcagacttcagtttcccgatatttatactgaccaataaatcggagatc agtgaaatcattaatacctgctatataaagttcaacaagcccctagaggatggttctccaagacctcaccccctctgtgc tgtagaactgaaggctcgaatgtcaggcgccaaagattcggaaacctgcattcgtcgtacgaatactccgacgaatctca acccagatacgtactgcgatcctttaggggataaaagcgtcgtcacgacgatgaaggctacaacacagaatgaagattta ccagataattctattattatggctatagcaaggctggactcattttccttgtttgagaatatttatcccagtgcagacaa ccatgttacaggaattgtgggattgctagctgcagcagaggctcttgggaaatatcaggacgacttcatgaaaaatgaca ccaaggatattatgtttgcctttctgaatggaattgaagaaatggtggatatcataaaaaatttaagcaacaatttgata gacagagctgatatcagtttgccccttcctcctgcgtcaactcagaggttcttgaaaaaaatggagaagaaaattccagc tgtcgtcatcactgaccaccagagggcgttcacaaataagtattataacagcaggtttgacctagccagtacgatcgagg cagacccaggtaacgtgactaacccagaggaagttgttacagagcaggcacggaaccttacactagcggcatctgcttta gctaaatcactgtacagactagcaacgggattggatcctcctcagaacatggaggcagatcagtcaacaattatgattgg aagtcgggggaatattctacgtggacggaatctagttggcaagtcggtgcaatcagtatcaggatcttcttag |
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Protein
| Protein ID | pfu_aug1.0_10456.1_02919.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10456.1_02919.t1 CTYISAGIKGDVGVVHYIQNSSDFDWLLQRGPDKPYAVLLHSEDFSPERVRQLWYSGKVNGIMVIHTTDDTDLTPLPSTF SPDNTCPGDPYGLYHGDSTYGNCKRQEWNPQGNGLFYADFSFPIFILTNKSEISEIINTCYIKFNKPLEDGSPRPHPLCA VELKARMSGAKDSETCIRRTNTPTNLNPDTYCDPLGDKSVVTTMKATTQNEDLPDNSIIMAIARLDSFSLFENIYPSADN HVTGIVGLLAAAEALGKYQDDFMKNDTKDIMFAFLNGIEEMVDIIKNLSNNLIDRADISLPLPPASTQRFLKKMEKKIPA VVITDHQRAFTNKYYNSRFDLASTIEADPGNVTNPEEVVTEQARNLTLAASALAKSLYRLATGLDPPQNMEADQSTIMIG SRGNILRGRNLVGKSVQSVSGSS |
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