Gene
| Gene Model ID | pfu_aug1.0_1048.1_51177 |
|---|---|
| Locus | scaffold1048.1 : 7979 ... 21395 : - |
| To GenomeBrowser | scaffold1048.1:7979..21395 |
| Genes list of scaffold | scaffold1048.1 |
| Synonym | pfu_aug2.0_671.1_04463 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1048.1_51177.t1 | 3 | 1 | EF-hand_7 | 8 | 52 | 3.0e-24 | 84.9 | 0.0093 | 17.0 | 5.6 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 1 | EF-hand_8 | 14 | 29 | 2.5e-15 | 55.8 | 0.22 | 410.0 | 0.6 |
| pfu_aug1.0_1048.1_51177.t1 | 5 | 1 | EF-hand_1 | 23 | 32 | 4.3e-25 | 85.0 | 0.52 | 960.0 | -0.5 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 1 | EF-hand_6 | 39 | 53 | 1.3e-19 | 68.2 | 0.038 | 70.0 | 3.7 |
| pfu_aug1.0_1048.1_51177.t1 | 5 | 2 | EF-hand_1 | 40 | 53 | 4.3e-25 | 85.0 | 0.009 | 17.0 | 5.0 |
| pfu_aug1.0_1048.1_51177.t1 | 3 | 2 | EF-hand_7 | 40 | 88 | 3.0e-24 | 84.9 | 2.1e-09 | 3.9e-06 | 26.9 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 1 | EF-hand_5 | 40 | 50 | 2.1e-19 | 67.8 | 0.0095 | 18.0 | 4.9 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 2 | EF-hand_8 | 40 | 86 | 2.5e-15 | 55.8 | 1.1e-09 | 2.1e-06 | 27.2 |
| pfu_aug1.0_1048.1_51177.t1 | 2 | 1 | SPARC_Ca_bdg | 41 | 86 | 4.0e-06 | 26.8 | 0.0053 | 9.8 | 6.2 |
| pfu_aug1.0_1048.1_51177.t1 | 5 | 3 | EF-hand_1 | 66 | 90 | 4.3e-25 | 85.0 | 1.4e-10 | 2.6e-07 | 29.4 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 2 | EF-hand_6 | 67 | 90 | 1.3e-19 | 68.2 | 1.7e-09 | 3.2e-06 | 26.5 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 2 | EF-hand_5 | 67 | 85 | 2.1e-19 | 67.8 | 3.1e-09 | 5.7e-06 | 25.4 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 3 | EF-hand_8 | 78 | 120 | 2.5e-15 | 55.8 | 2.1e-05 | 0.04 | 13.5 |
| pfu_aug1.0_1048.1_51177.t1 | 2 | 2 | SPARC_Ca_bdg | 97 | 170 | 4.0e-06 | 26.8 | 2.2e-06 | 0.0041 | 17.1 |
| pfu_aug1.0_1048.1_51177.t1 | 3 | 3 | EF-hand_7 | 100 | 171 | 3.0e-24 | 84.9 | 2.4e-18 | 4.4e-15 | 55.5 |
| pfu_aug1.0_1048.1_51177.t1 | 5 | 4 | EF-hand_1 | 101 | 127 | 4.3e-25 | 85.0 | 1.1e-10 | 2.1e-07 | 29.7 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 3 | EF-hand_6 | 104 | 126 | 1.3e-19 | 68.2 | 3.4e-07 | 0.00063 | 19.4 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 3 | EF-hand_5 | 104 | 123 | 2.1e-19 | 67.8 | 9.4e-08 | 0.00017 | 20.7 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 4 | EF-hand_8 | 113 | 172 | 2.5e-15 | 55.8 | 3.1e-10 | 5.7e-07 | 29.0 |
| pfu_aug1.0_1048.1_51177.t1 | 5 | 5 | EF-hand_1 | 150 | 174 | 4.3e-25 | 85.0 | 4.8e-09 | 9.0e-06 | 24.6 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 4 | EF-hand_6 | 151 | 172 | 1.3e-19 | 68.2 | 3.8e-06 | 0.007 | 16.1 |
| pfu_aug1.0_1048.1_51177.t1 | 4 | 4 | EF-hand_5 | 151 | 170 | 2.1e-19 | 67.8 | 4.2e-08 | 7.7e-05 | 21.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1048.1_51177.t1 | gi|325296875|ref|NP_001191469.1| | neurocalcin [Aplysia californica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1048.1_51177.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1048.1_51177.t1 atggggaagcagaatagcaagctcaaaccggaagtgctcgaagacttgcgcaatcaaacacaattttcagaagaggagtt acaagagtggtacaaaggttttctcaaagactgcccaagcggaaatctgtcagtggaagaatttaagaaaatttacggaa atttcttcccatacggagatgcatcgaaatttgccgaacatgtttttcggacttttgatactaacggcgatgggagcatt gacttccgagagtttatctgtgcgctgagtgttacgtcgagaggaaagttagatcagaaactaaaatgggctttcagtat gtacgacttagatggcaatggcttcatatcgagacaagaaatgctggaaatagtcacagcaatttacaaaatggtaggaa atgttatgaaaatgccagaggacgaatcaacaccagagaaaaggacggataagattttccgacaaatggacaagaatcta gacggaaagctttctttggacgaatttgtggagggagccaaaagtgacccgtctatcgtcaggttgctccaatgtgaacc caattctcaacaatga |
|
Protein
| Protein ID | pfu_aug1.0_1048.1_51177.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1048.1_51177.t1 MGKQNSKLKPEVLEDLRNQTQFSEEELQEWYKGFLKDCPSGNLSVEEFKKIYGNFFPYGDASKFAEHVFRTFDTNGDGSI DFREFICALSVTSRGKLDQKLKWAFSMYDLDGNGFISRQEMLEIVTAIYKMVGNVMKMPEDESTPEKRTDKIFRQMDKNL DGKLSLDEFVEGAKSDPSIVRLLQCEPNSQQ |
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