Gene
| Gene Model ID | pfu_aug1.0_105.1_29100 |
|---|---|
| Locus | scaffold105.1 : 9746 ... 11950 : + |
| To GenomeBrowser | scaffold105.1:9746..11950 |
| Genes list of scaffold | scaffold105.1 |
| Synonym | pfu_aug2.0_1433.1_11665 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-HES1 |
| Description | Best hit to NP_066993 transcription factor HES-4 isoform 2 [Homo sapiens] with 6e-13 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein has WRPW motif in its C-terminus, but does not have Hairy_orange domain. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_105.1_29100.t1 | 1 | 1 | HLH | 32 | 85 | 7.5e-09 | 35.1 | 1.0e-12 | 1.6e-08 | 34.1 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_105.1_29100.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_105.1_29100.t1 atgatgtcagaatccaaagaaaaatccttcggagaaaaactgatgaaaagactatctatacgagaaaaggctaatggagt tcctttagtgaagaggaagccaaacaagcctcttacagagaagaagagaagagacaagattaacaagtgcttggtacagc taaagaatattatactgagggctaaaggaaaggaggagaagaaatttgcacgactggaaaaggcagatatactggagatg acactaagtcacctgatggagatccatggacagacagacagacacaaagacagacggactgaggatctgagaacatgtac tccagcttatgatcctgtcatggagaatatcagatgtctgaatggcctgcagaataataactggagcagatatcctacac cccatggtagtgtgtaccctttgaccccaagatatcaacttggtaatggtcaaaaggtcattactgatgtaaactttgag catgaggacatgattgatgatgatgttatgtgtggatctgcctctagggtatttgtcatgggagagaactcctgtggaag ttttagtgcagacttacaggatggatggaaacagaagatacaggacaaaagtgttaacatggaaaccagtagagatgatc agagttatcatagagacaatcaggaaaaccatgtctatggaagttcttatgtgcaagaagatttcatctattccaagaag aatttgtccccagttggatgtctaccttgtgccacatcaactcctaaggccatttcttatggccttgacactcaaaattc agaagagatttctatggtcaaaggtcaaacatatgcacttaagtcaaattcatccttaagaaactggagccatatgcccc atgaaagattagtgggacatacatcagacttgaacactccagaactagctgttttaagggagatgcatggagacaggaat aaaggtcaaggccatgtggatgtttcatttgacccccgtgctagattgttttcatactcactttcatcatcagatgattc atgtagtgctagagtgagaattcagtcaaagtcacctgatacatcaactggacccagttcctccgattcctcgtaccaga aaccatggcgaccatggtaa |
|
Protein
| Protein ID | pfu_aug1.0_105.1_29100.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_105.1_29100.t1 MMSESKEKSFGEKLMKRLSIREKANGVPLVKRKPNKPLTEKKRRDKINKCLVQLKNIILRAKGKEEKKFARLEKADILEM TLSHLMEIHGQTDRHKDRRTEDLRTCTPAYDPVMENIRCLNGLQNNNWSRYPTPHGSVYPLTPRYQLGNGQKVITDVNFE HEDMIDDDVMCGSASRVFVMGENSCGSFSADLQDGWKQKIQDKSVNMETSRDDQSYHRDNQENHVYGSSYVQEDFIYSKK NLSPVGCLPCATSTPKAISYGLDTQNSEEISMVKGQTYALKSNSSLRNWSHMPHERLVGHTSDLNTPELAVLREMHGDRN KGQGHVDVSFDPRARLFSYSLSSSDDSCSARVRIQSKSPDTSTGPSSSDSSYQKPWRPW |
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