Gene
Gene Model ID | pfu_aug1.0_1057.1_65765 |
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Locus | scaffold1057.1 : 40116 ... 49920 : + |
To GenomeBrowser | scaffold1057.1:40116..49920 |
Genes list of scaffold | scaffold1057.1 |
Synonym | pfu_aug2.0_26.1_20078 |
Manual annotation
Study field | other developmental genes |
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Gene name | Tbx2/3/20? |
Description | Blast hits to Tbx 2, but simple NJ tree show an affinity to HsTbx2 and HsTbx3. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1057.1_65765.t2 | 1 | 1 | T-box | 88 | 114 | 3.7e-08 | 33.0 | 3.4e-12 | 5.0e-08 | 32.6 |
Transcript
Transcript ID | pfu_aug1.0_1057.1_65765.t1 |
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Definition | - |
>pfu_aug1.0_1057.1_65765.t1 atggaatctacgtgtaattctgaggagaattccagaatagatgttttacccggcatggacgtgggtccgagctcgcccaa taagacccctctctcatctaaggctacagctttttctattgccgctattatgggaggggagcggaaccagggtgtggaac agtaccctagtacctccctagaacgctccgaatctgcattttccactgaaatccctcctgtaccaaaaataccagaagca cgagtgtcgccctctataattgttccaaaggatttgaaagatgcaattccagttccgaaagaggacatctctaaaacgga accggaaacagatcacgatgaagtatctacgacaacttcaccggcctgtagcagagaacttgccggaatccaatgccgat tggaaaccaaagatttgtgggacaaatttcacgagctgggaacagagatgatcattacaaagactgggaggtatgagcaa tttgcacgtgtattcagagaatag |
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Transcript ID | pfu_aug1.0_1057.1_65765.t2 |
Definition | - |
>pfu_aug1.0_1057.1_65765.t2 atgggaggggagcggaaccagggtgtggaacagtaccctagtacctccctagaacgctccgaatctgcattttccactga aatccctcctgtaccaaaaataccagaagcacgagtgtcgccctctataattgttccaaaggatttgaaagatgcaattc cagttccgaaagaggacatctctaaaacggaaccggaaacagatcacgatgaagtatctacgacaacttcaccggcctgt agcagagaacttgccggaatccaatgccgattggaaaccaaagatttgtgggacaaatttcacgagctgggaacagagat gatcattacaaagactgggaggtatgagcaatttgcacgtgtattcagagaatag |
Protein
Protein ID | pfu_aug1.0_1057.1_65765.t1 |
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Definition | - |
>pfu_aug1.0_1057.1_65765.t1 MESTCNSEENSRIDVLPGMDVGPSSPNKTPLSSKATAFSIAAIMGGERNQGVEQYPSTSLERSESAFSTEIPPVPKIPEA RVSPSIIVPKDLKDAIPVPKEDISKTEPETDHDEVSTTTSPACSRELAGIQCRLETKDLWDKFHELGTEMIITKTGRYEQ FARVFRE |
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Protein ID | pfu_aug1.0_1057.1_65765.t2 |
Definition | - |
>pfu_aug1.0_1057.1_65765.t2 MGGERNQGVEQYPSTSLERSESAFSTEIPPVPKIPEARVSPSIIVPKDLKDAIPVPKEDISKTEPETDHDEVSTTTSPAC SRELAGIQCRLETKDLWDKFHELGTEMIITKTGRYEQFARVFRE |