Gene
| Gene Model ID | pfu_aug1.0_1057.1_65766 |
|---|---|
| Locus | scaffold1057.1 : 50096 ... 58258 : + |
| To GenomeBrowser | scaffold1057.1:50096..58258 |
| Genes list of scaffold | scaffold1057.1 |
| Synonym | NA |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Tbx20 |
| Description | Blast hits and simple NJ tree show an affinity to Tbx20. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1057.1_65766.t1 | 1 | 1 | T-box | 1 | 90 | 1.2e-33 | 116.0 | 2.4e-37 | 1.8e-33 | 115.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1057.1_65766.t1 | gi|261337146|ref|NP_001159692.1| | T-box transcription factor TBX20 isoform 2 [Homo sapiens] | 3.00004e-41 |
Transcript
| Transcript ID | pfu_aug1.0_1057.1_65766.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1057.1_65766.t1 atgttccccacccttcgagtatctttcactggtatagacccggaagtacgatatatggtcctgatggatatagtcccggt tgacaacaagagatatcgctacgcctatcaccgatcttcctggttagtcgccggaaaagcagacccaccactacctacgc ggctctatatgcacccagactccccgtacacaggggaacaactacagaaacaaacagtgtcatttgaaaaattaaaactg accaataacatgctggataaaaatggacacaagatcccagcgccttggaaaaacaaggaatgcttccgcatccccattgg cccgtgtggcgacctataccgtcgagcctggttggtcagtgcaaacaatttgagactccgtgattcgattcccgccagtg cttctacgtatacttctccggaacccaccggacttcatcatccgccggcagcctaccgctaccatccttatctcacgccg gataaaatcagcgccgcacagaagtctgcggaatcatcggtcacggacacctgtcgaccgtaa |
|
Protein
| Protein ID | pfu_aug1.0_1057.1_65766.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1057.1_65766.t1 MFPTLRVSFTGIDPEVRYMVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPTRLYMHPDSPYTGEQLQKQTVSFEKLKL TNNMLDKNGHKIPAPWKNKECFRIPIGPCGDLYRRAWLVSANNLRLRDSIPASASTYTSPEPTGLHHPPAAYRYHPYLTP DKISAAQKSAESSVTDTCRP |
|