Gene
| Gene Model ID | pfu_aug1.0_10574.1_24762 |
|---|---|
| Locus | scaffold10574.1 : 9812 ... 22395 : - |
| To GenomeBrowser | scaffold10574.1:9812..22395 |
| Genes list of scaffold | scaffold10574.1 |
| Synonym | pfu_aug2.0_1284.1_14931 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10574.1_24762.t1 | 3 | 1 | Med17 | 1 | 57 | 5.04467e-44 | 150.3 | 3.2e-05 | 0.24 | 9.6 |
| pfu_aug1.0_10574.1_24762.t1 | 3 | 2 | Med17 | 78 | 280 | 5.04467e-44 | 150.3 | 2.29953e-42 | 1.7e-38 | 132.1 |
| pfu_aug1.0_10574.1_24762.t1 | 3 | 3 | Med17 | 294 | 328 | 5.04467e-44 | 150.3 | 0.00013 | 0.95 | 7.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10574.1_24762.t1 | gi|57529323|ref|NP_001006280.1| | mediator of RNA polymerase II transcription subunit 17 [Gallus gallus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10574.1_24762.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10574.1_24762.t1 atgtcagagaatctcacaaagttagcccagaagatagatttctataaagacgagagcggcgagaagggaaagcccacctc cgagggcgagaaggaaagagaagaggagaaatctgtggctgcctttcagccctccctgtggccttgggactctgtcagaa ataaactcaagatacttcctttcaggaagtctcctactgttaccgtaacagttgagacattgccgctttgcaaggccctc aattcagcatctaccatcttgctagccggggcagaacgtctcaaaaagtcacaggcagagaacagcaacaaaagtgattt tcactttgagctgctgaaattacggcagaactggagactaaaaaagtctggaaacacaatattaggagatcttagctaca gatcagttggatctcgttaccctcataacagcacatttgaggttgtaaagagtacggaccttgtcggagaatcaggagag acaactcctacatccacacctcgcggaagtctggaggtgatcataccgagcgagctggagggaacggcttatatacaagt agaggtcaaatctgtaccagaatctctggatttaactggagctattttaaaaatgcccagtgggctgggggcggttcaca cgtactggcaacaaaagctggaagtggcacagaatgtactgttctgtaaagagatatttgcacagttggcaagagaggcc gttcagtcaaagtcatcagtaccccacctggtggtgggtaaccaaattatcacaaacatctttccaggcatacaactgtc cattgttctctgtcattctacaggaaaagagaaagacagaaaaggacagggctttgatatttcacattcagattccgttg acaccatgttgaatcaaatcataaaacagaccaagcataatgtactgagattaaggacacttcagacaatagatgccttt gccacgaccttaaatgaccctcaactgaccactcactggagttgtgctaataatagtttagaggccagctgtagggtgtt tataacatcacagggatatgatctgagaatttggcatagttttgtgctgatgattggagtagacagtataaaaatagcac acaaagacgggaggatatttaacttatcgtttgaggagaaagaattacaggactttattctgtggcagatagcccagcac cagacgagcgtgtcacagaacttggcacgtatgatgggatggcagatcatgagtacgtgtgctgcactgggcgtgtccga cctggaggacactggcattgcatcatctctattattagcttctcccgatcatgacaggtaa |
|
Protein
| Protein ID | pfu_aug1.0_10574.1_24762.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10574.1_24762.t1 MSENLTKLAQKIDFYKDESGEKGKPTSEGEKEREEEKSVAAFQPSLWPWDSVRNKLKILPFRKSPTVTVTVETLPLCKAL NSASTILLAGAERLKKSQAENSNKSDFHFELLKLRQNWRLKKSGNTILGDLSYRSVGSRYPHNSTFEVVKSTDLVGESGE TTPTSTPRGSLEVIIPSELEGTAYIQVEVKSVPESLDLTGAILKMPSGLGAVHTYWQQKLEVAQNVLFCKEIFAQLAREA VQSKSSVPHLVVGNQIITNIFPGIQLSIVLCHSTGKEKDRKGQGFDISHSDSVDTMLNQIIKQTKHNVLRLRTLQTIDAF ATTLNDPQLTTHWSCANNSLEASCRVFITSQGYDLRIWHSFVLMIGVDSIKIAHKDGRIFNLSFEEKELQDFILWQIAQH QTSVSQNLARMMGWQIMSTCAALGVSDLEDTGIASSLLLASPDHDR |
|