Gene
| Gene Model ID | pfu_aug1.0_10609.1_02949 |
|---|---|
| Locus | scaffold10609.1 : 1 ... 15325 : - |
| To GenomeBrowser | scaffold10609.1:1..15325 |
| Genes list of scaffold | scaffold10609.1 |
| Synonym | pfu_aug2.0_231.1_03838 |
Manual annotation
| Study field | cell cycle |
|---|---|
| Gene name | SMC4 |
| Description | blastp top hit to XP_002737646 [Saccoglossus kowalevskii], partial CDS |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10609.1_02949.t1 | 1 | 1 | SMC_N | 3 | 67 | 1.3e-20 | 73.5 | 9.1e-24 | 1.3e-20 | 73.5 |
| pfu_aug1.0_10609.1_02949.t1 | 2 | 1 | AAA_21 | 5 | 173 | 1.9e-06 | 28.0 | 1.3e-09 | 1.9e-06 | 28.0 |
| pfu_aug1.0_10609.1_02949.t1 | 7 | 1 | TPR_MLP1_2 | 74 | 92 | 3.1e-06 | 26.9 | 0.27 | 400.0 | 0.7 |
| pfu_aug1.0_10609.1_02949.t1 | 7 | 2 | TPR_MLP1_2 | 119 | 214 | 3.1e-06 | 26.9 | 0.0019 | 2.9 | 7.6 |
| pfu_aug1.0_10609.1_02949.t1 | 7 | 3 | TPR_MLP1_2 | 235 | 291 | 3.1e-06 | 26.9 | 0.00046 | 0.68 | 9.6 |
| pfu_aug1.0_10609.1_02949.t1 | 2 | 2 | AAA_21 | 240 | 321 | 1.9e-06 | 28.0 | 0.59 | 880.0 | -0.4 |
| pfu_aug1.0_10609.1_02949.t1 | 7 | 4 | TPR_MLP1_2 | 303 | 382 | 3.1e-06 | 26.9 | 1.7e-06 | 0.0025 | 17.5 |
| pfu_aug1.0_10609.1_02949.t1 | 1 | 1 | SMC_hinge | 397 | 467 | 3.5e-16 | 59.2 | 5.8e-19 | 8.6e-16 | 57.9 |
| pfu_aug1.0_10609.1_02949.t1 | 7 | 6 | TPR_MLP1_2 | 508 | 604 | 3.1e-06 | 26.9 | 0.0023 | 3.5 | 7.3 |
| pfu_aug1.0_10609.1_02949.t1 | 7 | 5 | TPR_MLP1_2 | 510 | 564 | 3.1e-06 | 26.9 | 0.0055 | 8.1 | 6.1 |
| pfu_aug1.0_10609.1_02949.t1 | 7 | 7 | TPR_MLP1_2 | 548 | 650 | 3.1e-06 | 26.9 | 4.2e-07 | 0.00062 | 19.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10609.1_02949.t1 | gi|348581742|ref|XP_003476636.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10609.1_02949.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10609.1_02949.t1 atgcacatcagtttcacatctattgttggaccaaatggaagtggaaagtccaatgtgatagactccatgttgtttgtttt tggatttagagcaaacaaaattagatccaagaaaataagtgttttaattcatgacagtgaaaaccataaaaatgtggagt cgtgtacagtcagtgtacatttccagaaaatcattgatactgggttgaacagagtgaaagctgtggagaaagagaaggat gacctggaggactctaagaatgaagctgtggaataccttaccatggaaaatgaaattgttcagctaaaaaataaactaca tcagaaatatatatacgagtgtgcagaaagtgagaggaaagcccaagaagagtatgataaaataaacgagggaatgaagg aggtcaatgaaaagatgaaggccatacaagatggaaagaaagaaaaagacaaggaactgaaaaatatatacaaacaatat gaacactttgtgaaggaaactgaagatacaaaagaaaagtttgccgagtgtgagaagcaggacgtaaaatgcagagagga tctgaagcacactaaggcaaaatccaagaaactagacaagcaactagaacaagaaaagaaaagggttgaagaattgaagt tggtacctgatgaagctgccaaatctattgaaggctttcagaaaaatctggaaaagttagaagtggagaaaaagaaagaa gatgaaaaactggcagctgtgatggaaagtctcaaaacagaaactaaggggctccaagaagagaaagattcaaaggaaga agagcttctcggtttaaagaaaacggtcaacgaaacaaagtccactttgagtgtagccaaaagtgaattggacatctacc tcagtaatcagcagagtgagaccaacagactgaaagacttacagagaaaactggagaaagctgaggtcaccctgaaagac agaaacaatgaaattactcagattgacaagaatttaccagaagtccagaagatggtagagaaagcgaaagtagactacca acaagctgtggaagctgaggtcaaggtcactaatcagctcagaggcatgagaaataaagttgaggaggcaaaaagttcta tgaatgcagcgagaagtcagggtaaagtgataggggctctgatggacctgaagaaatctggtaggatgcctggtgtacat gggagactgggagacttgggagcaatagacaataagtacgatgtggctatatccacagcatgtggagctctagaccatat tgtggtggatagcattaacacggctcaaaaatgtgtggagttcctgaagaaaaacaacgtaggatccgcaacattcattg gccttgacaaaatggcaaaatggaaggaccatgctcaaaggaaaattcagaccatctgtactttacatttgacagcctat gatgaagcaacaagctcagcatcagaagtggaaggaacagttcaaagtttacataaaaagatcatggatataggaggatc caagatgaaagcagctcagaaaaatgtggatgctgtgaacagtaagatagaccaagtgactggacagattacaaaggctc aagtaggcgtcaagacggcagaaaggaatttaaagaaagcagaagaaaaagtgaaatcagtagaggaagaaatagaagaa accaaggagaagttggtagaattagagaaattcttcaaacagctggaagaggatgctactaaagtcttagaggcttatca agcagcccaggataaaatgaaggagtcggaggttgccctgaatgccatgagggaggaggtcggtaaactggaggaggatg agaacaacctacagaaggacgtagtggacgtacgacacgagctggacaaaatacaagacatcatcaaaaccaaccagaaa aaaatcaaacactggaaaaaagagatggacagtctgaagttgacacctatagatggtaaggaggctggtgaacttaaaga attatcaagtgaagagcttgaggatgtagacatagagaaaacctcctatgagatcaccattatagaggaaagtctggcta agatgaaacccaatatggctgccatagctgaatataggaaaaaggaagagctgtacctacagagggtaggagagcttgac aaaatcactgatctacgggacaaccagaggaagtattttgaagacctccgtaaacaacggctggacgagttcatggcagg attcagtgtaattactaataaactaaaggagatgtatcagatgataacgctcggaggggatgccgagttagaactcgtgg actccctcgatcctttctcagagggtatagttttcaggttggttgactcactcaatccttttcagattggatag |
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Protein
| Protein ID | pfu_aug1.0_10609.1_02949.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10609.1_02949.t1 MHISFTSIVGPNGSGKSNVIDSMLFVFGFRANKIRSKKISVLIHDSENHKNVESCTVSVHFQKIIDTGLNRVKAVEKEKD DLEDSKNEAVEYLTMENEIVQLKNKLHQKYIYECAESERKAQEEYDKINEGMKEVNEKMKAIQDGKKEKDKELKNIYKQY EHFVKETEDTKEKFAECEKQDVKCREDLKHTKAKSKKLDKQLEQEKKRVEELKLVPDEAAKSIEGFQKNLEKLEVEKKKE DEKLAAVMESLKTETKGLQEEKDSKEEELLGLKKTVNETKSTLSVAKSELDIYLSNQQSETNRLKDLQRKLEKAEVTLKD RNNEITQIDKNLPEVQKMVEKAKVDYQQAVEAEVKVTNQLRGMRNKVEEAKSSMNAARSQGKVIGALMDLKKSGRMPGVH GRLGDLGAIDNKYDVAISTACGALDHIVVDSINTAQKCVEFLKKNNVGSATFIGLDKMAKWKDHAQRKIQTICTLHLTAY DEATSSASEVEGTVQSLHKKIMDIGGSKMKAAQKNVDAVNSKIDQVTGQITKAQVGVKTAERNLKKAEEKVKSVEEEIEE TKEKLVELEKFFKQLEEDATKVLEAYQAAQDKMKESEVALNAMREEVGKLEEDENNLQKDVVDVRHELDKIQDIIKTNQK KIKHWKKEMDSLKLTPIDGKEAGELKELSSEELEDVDIEKTSYEITIIEESLAKMKPNMAAIAEYRKKEELYLQRVGELD KITDLRDNQRKYFEDLRKQRLDEFMAGFSVITNKLKEMYQMITLGGDAELELVDSLDPFSEGIVFRLVDSLNPFQIG |
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