Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_10621.1_53565
Locus scaffold10621.1 : 1 ... 6285 : -
To GenomeBrowser scaffold10621.1:1..6285
Genes list of scaffold scaffold10621.1
Synonym pfu_aug2.0_6093.1_12848

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_10621.1_53565.t1 1 1 Thioredoxin 5 62 3.3e-09 36.3 2.8e-13 4.2e-09 36.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_10621.1_53565.t1 gi|289741221|gb|ADD19358.1| 4.0e-15

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 2
>Adult tissues
mantleEdge 2
mantlePallium 1

Transcript
Transcript IDpfu_aug1.0_10621.1_53565.t1
Definition-
>pfu_aug1.0_10621.1_53565.t1
atgacaacgcataaagacaccagcagagtgacgttagcaaaagttgacggcgatgcagaaagtggtattaaacaatatca
tatatcaaaatacccgacactaaaactcgtccgaaatggacagctgctgaaaaaagaatatcgaggtcaaaggtcggtgg
acgccttagcacaatacatcagggatgaattacgaagatctaaacaagaacaaacaactttgaaatcagtagatgaagat
gatctcacctga

Protein
Protein IDpfu_aug1.0_10621.1_53565.t1
Definition-
>pfu_aug1.0_10621.1_53565.t1
MTTHKDTSRVTLAKVDGDAESGIKQYHISKYPTLKLVRNGQLLKKEYRGQRSVDALAQYIRDELRRSKQEQTTLKSVDED
DLT

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