Gene
| Gene Model ID | pfu_aug1.0_1064.1_15333 |
|---|---|
| Locus | scaffold1064.1 : 39826 ... 45738 : + |
| To GenomeBrowser | scaffold1064.1:39826..45738 |
| Genes list of scaffold | scaffold1064.1 |
| Synonym | pfu_aug2.0_14.1_13386 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1064.1_15333.t1 | 1 | 1 | adh_short | 5 | 128 | 1.6e-07 | 31.3 | 7.6e-11 | 2.8e-07 | 30.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1064.1_15333.t1 | gi|260811740|ref|XP_002600580.1| | hypothetical protein BRAFLDRAFT_276673 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 2 |
| >Adult tissues | |
| Dshape | 2 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 3 |
Transcript
| Transcript ID | pfu_aug1.0_1064.1_15333.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1064.1_15333.t1 atgcttacagttgaggctgcgggcggtaaatgtttaccatgtattgtcgacattcgttatgaggaccaggtgcgtaaagc cgttcaagccgcggtagacaaatttggcggtatagatgttctagtgaataatgccagtgccataaatttgaccggtacat tagagactgggatgaagaaatatgaccttatgatgagtatcaacggtagaggaacatacctttgctctcatgtctgcttg ccataccttctgaaatcaaagaatccacacatactcaatataagccctccattaagtatgaaatcaaagtggttcaaaaa ccatgttgcttacacaaaggccaagtatggaatgtctatgtgtgccttaggaatgtcagaagaattcaaatcagagggtg tggctgtcaactgtctgtggccaaaaacaatgatctacacagcagcagtggccaatctgatgggaggggaaagttctcgt tcctatagccgtaaaccagatgtaatgagtgatgctgcctatatcatattatgtaaggacagcaggtcctacactggtaa ctttgctattgatgaagaagtactcaaaaagaatggtgtcacagatatggaccagtatgcttatgtaccagggaaccgac tacagttagactttttcttggatttggatgaaaaagaattggatttaggagcttctggcagtggtggtgtgggaccagac agagtgttccagcagataaagggagctctgaataaagagttggtgtcaggagtgggaggtgtcttccagttcaatcttac aggaggggatggtgccatcaaacactgccgtaaacctgagattatgagtgatgcggcctatgtaatactaacaaaggaca gcaggtcctacactggtaactttgccgttgatgaagaagtactcaaacagaatggtgtcacagatatggaccagtatgct catgtaccgggtattatattattcttctcacatctaaactga |
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Protein
| Protein ID | pfu_aug1.0_1064.1_15333.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1064.1_15333.t1 MLTVEAAGGKCLPCIVDIRYEDQVRKAVQAAVDKFGGIDVLVNNASAINLTGTLETGMKKYDLMMSINGRGTYLCSHVCL PYLLKSKNPHILNISPPLSMKSKWFKNHVAYTKAKYGMSMCALGMSEEFKSEGVAVNCLWPKTMIYTAAVANLMGGESSR SYSRKPDVMSDAAYIILCKDSRSYTGNFAIDEEVLKKNGVTDMDQYAYVPGNRLQLDFFLDLDEKELDLGASGSGGVGPD RVFQQIKGALNKELVSGVGGVFQFNLTGGDGAIKHCRKPEIMSDAAYVILTKDSRSYTGNFAVDEEVLKQNGVTDMDQYA HVPGIILFFSHLN |
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