Gene
| Gene Model ID | pfu_aug1.0_10660.1_10175 |
|---|---|
| Locus | scaffold10660.1 : 25323 ... 45565 : - |
| To GenomeBrowser | scaffold10660.1:25323..45565 |
| Genes list of scaffold | scaffold10660.1 |
| Synonym | pfu_aug2.0_15518.1_29834 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10660.1_10175.t1 | 1 | 1 | RVT_1 | 335 | 404 | 7.9e-06 | 25.3 | 8.7e-09 | 1.4e-05 | 24.5 |
| pfu_aug1.0_10660.1_10175.t1 | 2 | 1 | SRP54 | 362 | 409 | 0.0 | 172.2 | 0.011 | 18.0 | 4.7 |
| pfu_aug1.0_10660.1_10175.t1 | 2 | 2 | SRP54 | 469 | 685 | 0.0 | 172.2 | 0.0 | 0.0 | 164.1 |
| pfu_aug1.0_10660.1_10175.t1 | 1 | 1 | CbiA | 477 | 646 | 5.9e-08 | 32.3 | 7.5e-11 | 1.2e-07 | 31.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10660.1_10175.t1 | gi|350396130|ref|XP_003484452.1| | PREDICTED: signal recognition particle receptor subunit alpha homolog isoform X2 [Bombus impatiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_10660.1_10175.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10660.1_10175.t1 atgagtcgtaaattttatgaaacatacctacacgacctacctttacaaccggtcaatagtatccttacattagaatgcgc tgatggatcagagctaccatactatggcgtagttacatgtgacttacatgtagaaggcatacctgagtgtgagggagcct tagaatgtttgttcttggttgtaaatgataccgattatcacagtacagtaccagtactaataggtaccaatattttatca gttcttttaaccgacaccaaagagagatttggtgttcgatttttacagaaagctggattgtatatgccatggtatttggc ctttagatgtatgactttaagggaaagggagctaagtcatcgctcccatgttctagcactagtcagatctgctgaactaa aacccattaccatacggccaaactgtagtgttgttgtgaatggctacttgtatgatgaggtaccataccaccctgtatgt gggatgttgacacctactagagattcgggtatctccaatgaccttgacattgaaccttctgtcattacatatgatttgaa cagaagagatgtagtacctgtacaaattagtaatgtcaccacggacacattcaatatacagccgcatgcgttgttatgtg aagtgcaacgggtcacggtagatactagtagtgcaccggatccggaagtagaatctgaaacgaattctgaagcatatcaa aagattgatattgctagtgacgacctcacagagactcaattgcaacaagtcgaggcattggtaaatgagtttgatagctt gttttctaaaagtgagactgatgtaggccattgtccctttgtcgagcacaaaatagaactgctcaatgaaacacctttca agcagcgatttcgacggatacctccctcgatgctacatgaagtacgagagcatatcgaacagcagcttgctgcaggtatc atccgcaggtcgaaatcgcctttcgcctcgaatgtcgtcctagtccgcaagaaaaacggacagttacgcatatgcgttga ttatcgccatcttaacagcgtaactaagaaagacaattacgctttaccccgaattgatgaaattcttgattcacttagtg ggaactcgtggttctcggtactcgacatgaaatcgggttatcatcagatacctatagcggaagaccacaaggaacgcacg gcgttcacgaccgtgataatcaagaaaaatgttgaggtcgcgtctttgcaacctattgaagaaatcgtagatttccgtaa ttccgccataactaacacagtaaaatcaacattagaggaatcctgcgtgcagatcttgttacccaaacggcgtatagaca tactaagagacgcgatggacgctaagcagaagggccgtccattctgtgtaacattctgtggtgttaatggagtgggcaaa tctacaaatctagctaagatctgcttttggttggttgagaacaatttccgtgtactgattgccgcctgtgacacatttag agctggagctgttgagcagttacggacgcatgtacgtaagctgaatgcacttcaccctgcagacagacatcagggacaga caatggtacaactgtacgagaagggatatggaaaagactcagctggaatcgctatggaggcaattaattatgctcgtgat tgccgtatggatattgtactgatagacacagccggtagaatgcaggacaacgagcctctcatgagagctttgtctaagct gatcaaggtgaaccagccagacctggtcctgtttgttggtgaggctttagtcggaaacgaagctgtggatcagttaacca agtttaaccaagcactcgccgatcattctaacatgaccaaccccaggcttatagacggcatcattctcactaagtttgac actatagatgataaggtgggagcggccatttctatgacgtatactaccggccagcctattgtatttgtgggtacgggaca gacttacacagacctacgtaaccttaatgccaaggctgtggtatctgcccttctcaagtaa |
|
Protein
| Protein ID | pfu_aug1.0_10660.1_10175.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10660.1_10175.t1 MSRKFYETYLHDLPLQPVNSILTLECADGSELPYYGVVTCDLHVEGIPECEGALECLFLVVNDTDYHSTVPVLIGTNILS VLLTDTKERFGVRFLQKAGLYMPWYLAFRCMTLRERELSHRSHVLALVRSAELKPITIRPNCSVVVNGYLYDEVPYHPVC GMLTPTRDSGISNDLDIEPSVITYDLNRRDVVPVQISNVTTDTFNIQPHALLCEVQRVTVDTSSAPDPEVESETNSEAYQ KIDIASDDLTETQLQQVEALVNEFDSLFSKSETDVGHCPFVEHKIELLNETPFKQRFRRIPPSMLHEVREHIEQQLAAGI IRRSKSPFASNVVLVRKKNGQLRICVDYRHLNSVTKKDNYALPRIDEILDSLSGNSWFSVLDMKSGYHQIPIAEDHKERT AFTTVIIKKNVEVASLQPIEEIVDFRNSAITNTVKSTLEESCVQILLPKRRIDILRDAMDAKQKGRPFCVTFCGVNGVGK STNLAKICFWLVENNFRVLIAACDTFRAGAVEQLRTHVRKLNALHPADRHQGQTMVQLYEKGYGKDSAGIAMEAINYARD CRMDIVLIDTAGRMQDNEPLMRALSKLIKVNQPDLVLFVGEALVGNEAVDQLTKFNQALADHSNMTNPRLIDGIILTKFD TIDDKVGAAISMTYTTGQPIVFVGTGQTYTDLRNLNAKAVVSALLK |
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