Gene
| Gene Model ID | pfu_aug1.0_1070.1_36819 |
|---|---|
| Locus | scaffold1070.1 : 29728 ... 40235 : - |
| To GenomeBrowser | scaffold1070.1:29728..40235 |
| Genes list of scaffold | scaffold1070.1 |
| Synonym | pfu_aug2.0_433.1_10764 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1070.1_36819.t1 | 1 | 1 | CAP | 39 | 167 | 4.6e-16 | 59.4 | 4.8e-20 | 7.1e-16 | 58.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1070.1_36819.t1 | gi|260828556|ref|XP_002609229.1| | hypothetical protein BRAFLDRAFT_90683 [Branchiostoma floridae] | 1.0e-31 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
Transcript
| Transcript ID | pfu_aug1.0_1070.1_36819.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1070.1_36819.t1 atggatggcgaaggagtggtaaaggatagcaaagtcaacaaaagaggattcgaacgtaggtcaactccaaccgatgctga ggtgaaggcggactacatggcggcccacataagaaacaggggatcagttagcccaaccgccaccaacatgaagcatatta gattgagtaatgaattagcagctgttgctcaggaatgggcagagacttgtaaatggagccataatcccgatcgttcttcc aagtccccatcattcggttatgtgggtgaaaacaagtatttacgtacaggaaatttcaacatgacacgttctgtagatta ttggatgcttgaggcttcaaaatatgattatgacacacaaacctgtagcaacggcatttgtacccattacacacaggttg tctggcacaactcggagtacgttggttgtgggattcaattttgctcttcaatgattggacttgatggatggaacaatgta tactaccatgtctgtaactatggtcccgggggtaattacaatggacaggatccctacacttccggaacaacatgtgccga ttgctcatcagacgatcctttctgttgtaaagacaaccaatgtctggtggccgagacgctggagtaa |
|
Protein
| Protein ID | pfu_aug1.0_1070.1_36819.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1070.1_36819.t1 MDGEGVVKDSKVNKRGFERRSTPTDAEVKADYMAAHIRNRGSVSPTATNMKHIRLSNELAAVAQEWAETCKWSHNPDRSS KSPSFGYVGENKYLRTGNFNMTRSVDYWMLEASKYDYDTQTCSNGICTHYTQVVWHNSEYVGCGIQFCSSMIGLDGWNNV YYHVCNYGPGGNYNGQDPYTSGTTCADCSSDDPFCCKDNQCLVAETLE |
|