Gene
| Gene Model ID | pfu_aug1.0_10712.1_31966 |
|---|---|
| Locus | scaffold10712.1 : 17426 ... 34760 : + |
| To GenomeBrowser | scaffold10712.1:17426..34760 |
| Genes list of scaffold | scaffold10712.1 |
| Synonym | pfu_aug2.0_885.1_17908 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10712.1_31966.t1 | 1 | 1 | 2Fe-2S_thioredx | 132 | 261 | 0.0 | 184.6 | 0.0 | 0.0 | 184.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10712.1_31966.t1 | gi|260797853|ref|XP_002593915.1| | hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10712.1_31966.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10712.1_31966.t1 atgcatctgaccgaaaaaaagtgcaacacattcagtaaagtcacggcagattcgtggatttcatcagacaacagtagcat atggaggccagttatttgtgatgaaaatctgaagtcacggcagattcgtggatttcatcagacaacagtagcatgtggag gccagttatttgtgcacagggattcccctgagaataatgctaacacaccattcaaattcacagatgaaaatctgaaggga tatgaagtgagaatcctttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttg accttgcacagaggcaacatggatggctgcccatctctgccatgcatgaagtggcaaagattctcaaaatgccaaaaata cgagtttatgaagtagctacattttataccatgttcaataggaagccagtaggtaaatactttgttcagatctgtacgac cacaccctgtatgttagggggcgtaggatctgacgtcatactggacgccatcaaagaaaatctgggtataaatgtagggg agacgactccagataacatgtttaccctgatagaagtggagtgtttaggagcgtgtgtgaatgctcctatggtacagatc aacgataattattacgaggaccttacagtagatgatatgcatagaattctcaatgacataaagaaaggagtaatgccaaa agcagggcctcagagtggtcagaatcacaggtatgcagcggagccaaaagaggggctgacctgcctcacagaggaaccaa aaggaccgggcttcggggttaggcctgacctatga |
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Protein
| Protein ID | pfu_aug1.0_10712.1_31966.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10712.1_31966.t1 MHLTEKKCNTFSKVTADSWISSDNSSIWRPVICDENLKSRQIRGFHQTTVACGGQLFVHRDSPENNANTPFKFTDENLKG YEVRILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDLAQRQHGWLPISAMHEVAKILKMPKI RVYEVATFYTMFNRKPVGKYFVQICTTTPCMLGGVGSDVILDAIKENLGINVGETTPDNMFTLIEVECLGACVNAPMVQI NDNYYEDLTVDDMHRILNDIKKGVMPKAGPQSGQNHRYAAEPKEGLTCLTEEPKGPGFGVRPDL |
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