Gene
| Gene Model ID | pfu_aug1.0_10715.1_53574 |
|---|---|
| Locus | scaffold10715.1 : 45286 ... 51238 : + |
| To GenomeBrowser | scaffold10715.1:45286..51238 |
| Genes list of scaffold | scaffold10715.1 |
| Synonym | pfu_aug2.0_91.1_03599 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10715.1_53574.t1 | 1 | 1 | PCNA_N | 1 | 125 | 0.0 | 194.3 | 0.0 | 0.0 | 193.7 |
| pfu_aug1.0_10715.1_53574.t1 | 1 | 1 | Rad9 | 14 | 172 | 6.0e-06 | 25.5 | 1.7e-09 | 8.6e-06 | 25.0 |
| pfu_aug1.0_10715.1_53574.t1 | 2 | 1 | PCNA_C | 68 | 101 | 5.4e-26 | 91.0 | 0.078 | 380.0 | 0.9 |
| pfu_aug1.0_10715.1_53574.t1 | 2 | 2 | PCNA_C | 127 | 180 | 5.4e-26 | 91.0 | 9.5e-29 | 4.7e-25 | 87.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10715.1_53574.t1 | gi|241747703|ref|XP_002414350.1| | DNA polymerase delta processivity factor, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10715.1_53574.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10715.1_53574.t1 atgttcgaagctcgacttgttcagggatcactatggaagaaagtgttggaagccatcaaagacttgataaatgaagcaat atgggattgcagtggtactggaatcacactgcaagctatggacaatgcacacgttgctttggtagcggtgaatttgcgaa gtgatggatttgaaacctacaggtgcgacagaaacttgtcgatggggatgagtctaacgagcatgtcaaagattttgaag tgtgccagcaacgatgatgtcattaccataaaagcgaacgacaatgcagatactgtaacatttatgtttgaatcacccaa taatgagaaagtgtcagattattcgatgaaattgtttgacttggacactgagcagttgggaattccagacacagaatata gtgcagtagttaagatgccatctgctgaatttcaaagaatatgccgagatttaagtcagattggagaatctgttgtcatt tgctgcacgaaagaaggcgttaaattttctgccagtggtgacctcggaacagttgaatgtttgagaaaataccgcatcat aattttgagccctcgtaacgtcacgcgcgtcatgttttga |
|
Protein
| Protein ID | pfu_aug1.0_10715.1_53574.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10715.1_53574.t1 MFEARLVQGSLWKKVLEAIKDLINEAIWDCSGTGITLQAMDNAHVALVAVNLRSDGFETYRCDRNLSMGMSLTSMSKILK CASNDDVITIKANDNADTVTFMFESPNNEKVSDYSMKLFDLDTEQLGIPDTEYSAVVKMPSAEFQRICRDLSQIGESVVI CCTKEGVKFSASGDLGTVECLRKYRIIILSPRNVTRVMF |
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