Gene
| Gene Model ID | pfu_aug1.0_10761.1_31980 |
|---|---|
| Locus | scaffold10761.1 : 45 ... 17731 : + |
| To GenomeBrowser | scaffold10761.1:45..17731 |
| Genes list of scaffold | scaffold10761.1 |
| Synonym | pfu_aug2.0_194.1_13763 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Chitinase-like protein |
| Description | Family 18 Chitinase, best hit to BLAST P86955.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10761.1_31980.t1 | 1 | 1 | Glyco_hydro_18 | 59 | 394 | 0.0 | 241.4 | 0.0 | 0.0 | 241.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10761.1_31980.t1 | gi|353558824|sp|P86955.1|CHI_PINMA | Putative chitinase [Pinctada maxima] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 2 |
| mantlePallium | 3 |
Transcript
| Transcript ID | pfu_aug1.0_10761.1_31980.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10761.1_31980.t1 atgagcatgccgtgtccgccaaggacattctacgacgagaacagacataaatgtgactatatcggcaacattcgtgtttt ttctttttctttttggaaccgacatattaaaatgtaccttggattactggttgtggccatttttgccgtcggatctttgg gacaaaagttcaataggttttgccactacaacagctggtccttatccagaaatccagaacatggccttatcccagaggat atcgatccgtttctatgtacccacattattctcgggttcgccgaaatcgacgaaacggggcttcgactaaaagatcccaa ccattaccaacaagaatatctttatcaacgaatagtgcgattacgaagaataaatcccagactgaacatgattttatcag ttggtggatgggacaaatcgcaagaagggtattctaaacttgtatcatccagagaaaatattcttttcttcacaaaatgg atcattacgtatcttcgacgtcacgacttcgacggcctcgatttggattgggagtacccgacattcaaaggcagtccgat ggctgatagaaagaaatttgttgatcttgttgagaacttggcttacgaatttgacatcgaagaaattccggacatcaagt ggaaactgaccctgacgtggacggcagacccgcttgagccaataagaacttctgcgtatgacattaaaggaatagcaagc aaggtgcactttgtcaacttgaagatgtacgatttccatggacattgggacgatccactacaagtcaaccaccacagtcc tctgaccaacccaagcagtcccagaaatgttaatgaattagccaaaacatgggtgaaagcaggtgttcgaattgagaagt tgatacttggaattcctttcttcggtagatcgtttacactgaaaacagctaatatgtctatgccaggatcaccagccgta ggaccaggatccgactatggcgacgggatccctattcacaatttatgtcacataattcgaggaggaacaaaggaacttta ccttccagagaagaaagtaccatacatagtcagcggcagtgaatggatcgggtatgataatccacggagtgttatggaaa aggctcagctagtcttcaacaatgccttggccggagtgatgatatattctttagacatggatgaccacagaggtacatgt ggtcagaaataccccatgatgatggcggtcatccatggactgaatgcctacatggagtacattgactctaaacacaagtc cctggaactcacctacaacaagaagatcctccgtgcgagggtttccttgcgaaattaccgacgaaggaatcagccagaca aagttgcagaggtgcagcagaggattcgccaaattgagcaggagcaacagcaagcaatggggaacatggtgtacgaaaga caacaagcacaagctatgttaaatagaggggtgtcgctccctccgatagaacaacagtcgtggtcatggtag |
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Protein
| Protein ID | pfu_aug1.0_10761.1_31980.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10761.1_31980.t1 MSMPCPPRTFYDENRHKCDYIGNIRVFSFSFWNRHIKMYLGLLVVAIFAVGSLGQKFNRFCHYNSWSLSRNPEHGLIPED IDPFLCTHIILGFAEIDETGLRLKDPNHYQQEYLYQRIVRLRRINPRLNMILSVGGWDKSQEGYSKLVSSRENILFFTKW IITYLRRHDFDGLDLDWEYPTFKGSPMADRKKFVDLVENLAYEFDIEEIPDIKWKLTLTWTADPLEPIRTSAYDIKGIAS KVHFVNLKMYDFHGHWDDPLQVNHHSPLTNPSSPRNVNELAKTWVKAGVRIEKLILGIPFFGRSFTLKTANMSMPGSPAV GPGSDYGDGIPIHNLCHIIRGGTKELYLPEKKVPYIVSGSEWIGYDNPRSVMEKAQLVFNNALAGVMIYSLDMDDHRGTC GQKYPMMMAVIHGLNAYMEYIDSKHKSLELTYNKKILRARVSLRNYRRRNQPDKVAEVQQRIRQIEQEQQQAMGNMVYER QQAQAMLNRGVSLPPIEQQSWSW |
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