Gene
| Gene Model ID | pfu_aug1.0_108.1_50631 |
|---|---|
| Locus | scaffold108.1 : 22296 ... 23872 : + |
| To GenomeBrowser | scaffold108.1:22296..23872 |
| Genes list of scaffold | scaffold108.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-SCL |
| Description | Best hit to CAA36246 tal1 [Homo sapiens] with 1e-28 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_108.1_50631.t1 | 1 | 1 | HLH | 143 | 194 | 1.5e-16 | 59.8 | 1.6e-20 | 2.3e-16 | 59.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_108.1_50631.t1 | gi|14906481|gb|AAK72692.1| | 7.00649e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_108.1_50631.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_108.1_50631.t1 atgtccctaacgaaggcagtgattagactccaagaagatctcctacttcgctccaaggacagaaacggcacaaaatctga aaaccatgaagaatacaatcgtttaatcaccggaagtagtagcgatgttttctgttcagtatcacgtgattcagttcgga cagtttccggtgaacatgacgatacatcaataagcgaggagggagatgacaatgtgttttgtgaatctgacaaatcaaag gaaaatggttttatttgtctacaaagtgttccaatgtccatgttgtcgccacgcccagttttcctaagttcgtcgtccga cagtacatcgttagatggcccactggacctccggcaaaaacgatatagtataggaagatacagtgattgtgaaaacgaga cagttaatctacaaaaactgcgccataagaggatgttcacaaacagtcgagagagatggcgtcagcaaaacgtaaacggt gcatttgccgaacttcgtaaactagtcccgacccatcctcctgacaagaagctgagcaagcacgaaattttacggtcttc aataaaatatatacgacttttggaaaaggttattgactttcaagatcagcaagcgggcaatgttaaatcagagaccgcat ccacttccgatacatcacatgcgtccgccggcacgtccagtagtttgggttcttacgtagatcagccgtcaatgactttt ctacgtcagccgcctcgtgacgtcacgaccatgtgggacaagaccgacttcagtccgagctgtaatgacgccgacgatga gggggaggaatttgcgtga |
|
Protein
| Protein ID | pfu_aug1.0_108.1_50631.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_108.1_50631.t1 MSLTKAVIRLQEDLLLRSKDRNGTKSENHEEYNRLITGSSSDVFCSVSRDSVRTVSGEHDDTSISEEGDDNVFCESDKSK ENGFICLQSVPMSMLSPRPVFLSSSSDSTSLDGPLDLRQKRYSIGRYSDCENETVNLQKLRHKRMFTNSRERWRQQNVNG AFAELRKLVPTHPPDKKLSKHEILRSSIKYIRLLEKVIDFQDQQAGNVKSETASTSDTSHASAGTSSSLGSYVDQPSMTF LRQPPRDVTTMWDKTDFSPSCNDADDEGEEFA |
|