Gene
Gene Model ID | pfu_aug1.0_108.1_50631 |
---|---|
Locus | scaffold108.1 : 22296 ... 23872 : + |
To GenomeBrowser | scaffold108.1:22296..23872 |
Genes list of scaffold | scaffold108.1 |
Synonym | NA |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-SCL |
Description | Best hit to CAA36246 tal1 [Homo sapiens] with 1e-28 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_108.1_50631.t1 | 1 | 1 | HLH | 143 | 194 | 1.5e-16 | 59.8 | 1.6e-20 | 2.3e-16 | 59.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_108.1_50631.t1 | gi|14906481|gb|AAK72692.1| | 7.00649e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_108.1_50631.t1 |
---|---|
Definition | - |
>pfu_aug1.0_108.1_50631.t1 atgtccctaacgaaggcagtgattagactccaagaagatctcctacttcgctccaaggacagaaacggcacaaaatctga aaaccatgaagaatacaatcgtttaatcaccggaagtagtagcgatgttttctgttcagtatcacgtgattcagttcgga cagtttccggtgaacatgacgatacatcaataagcgaggagggagatgacaatgtgttttgtgaatctgacaaatcaaag gaaaatggttttatttgtctacaaagtgttccaatgtccatgttgtcgccacgcccagttttcctaagttcgtcgtccga cagtacatcgttagatggcccactggacctccggcaaaaacgatatagtataggaagatacagtgattgtgaaaacgaga cagttaatctacaaaaactgcgccataagaggatgttcacaaacagtcgagagagatggcgtcagcaaaacgtaaacggt gcatttgccgaacttcgtaaactagtcccgacccatcctcctgacaagaagctgagcaagcacgaaattttacggtcttc aataaaatatatacgacttttggaaaaggttattgactttcaagatcagcaagcgggcaatgttaaatcagagaccgcat ccacttccgatacatcacatgcgtccgccggcacgtccagtagtttgggttcttacgtagatcagccgtcaatgactttt ctacgtcagccgcctcgtgacgtcacgaccatgtgggacaagaccgacttcagtccgagctgtaatgacgccgacgatga gggggaggaatttgcgtga |
Protein
Protein ID | pfu_aug1.0_108.1_50631.t1 |
---|---|
Definition | - |
>pfu_aug1.0_108.1_50631.t1 MSLTKAVIRLQEDLLLRSKDRNGTKSENHEEYNRLITGSSSDVFCSVSRDSVRTVSGEHDDTSISEEGDDNVFCESDKSK ENGFICLQSVPMSMLSPRPVFLSSSSDSTSLDGPLDLRQKRYSIGRYSDCENETVNLQKLRHKRMFTNSRERWRQQNVNG AFAELRKLVPTHPPDKKLSKHEILRSSIKYIRLLEKVIDFQDQQAGNVKSETASTSDTSHASAGTSSSLGSYVDQPSMTF LRQPPRDVTTMWDKTDFSPSCNDADDEGEEFA |