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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_108.1_50632
Locus scaffold108.1 : 26745 ... 49825 : -
To GenomeBrowser scaffold108.1:26745..49825
Genes list of scaffold scaffold108.1
Synonym pfu_aug2.0_4.1_13358

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_108.1_50632.t1 7 1 WD40 116 136 4.2e-29 99.3 0.46 2300.0 -1.3
pfu_aug1.0_108.1_50632.t1 7 2 WD40 148 180 4.2e-29 99.3 1.4e-07 0.00069 19.4
pfu_aug1.0_108.1_50632.t1 2 1 eIF2A 152 197 5.4e-08 32.7 2.0e-05 0.098 12.3
pfu_aug1.0_108.1_50632.t1 7 3 WD40 186 197 4.2e-29 99.3 0.12 600.0 0.5
pfu_aug1.0_108.1_50632.t1 7 4 WD40 235 252 4.2e-29 99.3 0.00088 4.4 7.3
pfu_aug1.0_108.1_50632.t1 7 5 WD40 266 300 4.2e-29 99.3 4.0e-13 2.0e-09 36.9
pfu_aug1.0_108.1_50632.t1 2 2 eIF2A 289 400 5.4e-08 32.7 3.6e-07 0.0018 18.0
pfu_aug1.0_108.1_50632.t1 7 6 WD40 305 345 4.2e-29 99.3 7.8e-10 3.9e-06 26.5
pfu_aug1.0_108.1_50632.t1 7 7 WD40 373 395 4.2e-29 99.3 1.2e-05 0.062 13.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_108.1_50632.t1 gi|269785225|ref|NP_001161540.1| fizzy-like protein [Saccoglossus kowalevskii] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_108.1_50632.t1
Definition-
>pfu_aug1.0_108.1_50632.t1
atggataaaaacataaagaccgaccagaaaaacaacttgccccgcgggctagctgagttcagaaatgacttgcccgaccg
atttttgatacggcaagggcaattggacaaccgcttatgttcaaccctgcagaaagggcccttgtcattgtcccctcgga
tgagccctggaagtcctgtagcctctcccagtaaggacaagtatggtgatcgttttattcctagtcgagcaggatcaagc
tggcatatcaactttaatatgtccaaggctgtaaggaagatatcaaagattccatttaaggttttagatgcccctgaact
acaggatgatttctaccttaacttagtggactggtcatcacagaatgtacttagtgtaggactaggtacatgtgtctacc
tgtggagtgcatgtacaagtcaggtgacaagactgtgtgatttatccagtgacaacgacacagtgacctcagtgtcatgg
tcagagaggggtaaccttgtcgctgtaggaactcataaaggttatgttcagatatgggatgtggcagctaccaagaagtt
aaacacactggagggacacacagccagagtaggtttctattccaatgaaaatccatcattttggtcacatgaaagaagca
atctccattggtatagtactctagaaatctgtattatactccaggaaattgttagtaccggtgccctagcatggaatgct
gacatcttgtcatctgggagcagagacagactgatatttcagcgggatattcgtacaccgtgtgtggctccagataggaa
attaataggacataaacaggaagtttgtggtctgaagtggtcacctgaccatcagcatctggcttcaggtggcaatgaca
ataagttatatgtgtggaatatgacgagcactaacccagtacaaacatataatgaacatttagctgcagtgaaagctatt
tcctggtctccccaccagcacggattattagccagcggtgggggaacagcagatagatgtatacgtttttggaatactct
gacagggcagcctttacagtgtgtagacactggatctcaagtgtgcaatctagcgtggtcaaaacattctaatgaactgg
cgatgtcaccagatggagaggccatagtgacaggtgctggggatgagacattacgtttctggaatgtctttagcaagacc
aggtctaccaaggaatctaagtcagtgttgaatctcttcacacgcattcgctaa

Protein
Protein IDpfu_aug1.0_108.1_50632.t1
Definition-
>pfu_aug1.0_108.1_50632.t1
MDKNIKTDQKNNLPRGLAEFRNDLPDRFLIRQGQLDNRLCSTLQKGPLSLSPRMSPGSPVASPSKDKYGDRFIPSRAGSS
WHINFNMSKAVRKISKIPFKVLDAPELQDDFYLNLVDWSSQNVLSVGLGTCVYLWSACTSQVTRLCDLSSDNDTVTSVSW
SERGNLVAVGTHKGYVQIWDVAATKKLNTLEGHTARVGFYSNENPSFWSHERSNLHWYSTLEICIILQEIVSTGALAWNA
DILSSGSRDRLIFQRDIRTPCVAPDRKLIGHKQEVCGLKWSPDHQHLASGGNDNKLYVWNMTSTNPVQTYNEHLAAVKAI
SWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCVDTGSQVCNLAWSKHSNELAMSPDGEAIVTGAGDETLRFWNVFSKT
RSTKESKSVLNLFTRIR

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