Gene
Gene Model ID | pfu_aug1.0_108.1_50632 |
---|---|
Locus | scaffold108.1 : 26745 ... 49825 : - |
To GenomeBrowser | scaffold108.1:26745..49825 |
Genes list of scaffold | scaffold108.1 |
Synonym | pfu_aug2.0_4.1_13358 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_108.1_50632.t1 | 7 | 1 | WD40 | 116 | 136 | 4.2e-29 | 99.3 | 0.46 | 2300.0 | -1.3 |
pfu_aug1.0_108.1_50632.t1 | 7 | 2 | WD40 | 148 | 180 | 4.2e-29 | 99.3 | 1.4e-07 | 0.00069 | 19.4 |
pfu_aug1.0_108.1_50632.t1 | 2 | 1 | eIF2A | 152 | 197 | 5.4e-08 | 32.7 | 2.0e-05 | 0.098 | 12.3 |
pfu_aug1.0_108.1_50632.t1 | 7 | 3 | WD40 | 186 | 197 | 4.2e-29 | 99.3 | 0.12 | 600.0 | 0.5 |
pfu_aug1.0_108.1_50632.t1 | 7 | 4 | WD40 | 235 | 252 | 4.2e-29 | 99.3 | 0.00088 | 4.4 | 7.3 |
pfu_aug1.0_108.1_50632.t1 | 7 | 5 | WD40 | 266 | 300 | 4.2e-29 | 99.3 | 4.0e-13 | 2.0e-09 | 36.9 |
pfu_aug1.0_108.1_50632.t1 | 2 | 2 | eIF2A | 289 | 400 | 5.4e-08 | 32.7 | 3.6e-07 | 0.0018 | 18.0 |
pfu_aug1.0_108.1_50632.t1 | 7 | 6 | WD40 | 305 | 345 | 4.2e-29 | 99.3 | 7.8e-10 | 3.9e-06 | 26.5 |
pfu_aug1.0_108.1_50632.t1 | 7 | 7 | WD40 | 373 | 395 | 4.2e-29 | 99.3 | 1.2e-05 | 0.062 | 13.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_108.1_50632.t1 | gi|269785225|ref|NP_001161540.1| | fizzy-like protein [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_108.1_50632.t1 |
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Definition | - |
>pfu_aug1.0_108.1_50632.t1 atggataaaaacataaagaccgaccagaaaaacaacttgccccgcgggctagctgagttcagaaatgacttgcccgaccg atttttgatacggcaagggcaattggacaaccgcttatgttcaaccctgcagaaagggcccttgtcattgtcccctcgga tgagccctggaagtcctgtagcctctcccagtaaggacaagtatggtgatcgttttattcctagtcgagcaggatcaagc tggcatatcaactttaatatgtccaaggctgtaaggaagatatcaaagattccatttaaggttttagatgcccctgaact acaggatgatttctaccttaacttagtggactggtcatcacagaatgtacttagtgtaggactaggtacatgtgtctacc tgtggagtgcatgtacaagtcaggtgacaagactgtgtgatttatccagtgacaacgacacagtgacctcagtgtcatgg tcagagaggggtaaccttgtcgctgtaggaactcataaaggttatgttcagatatgggatgtggcagctaccaagaagtt aaacacactggagggacacacagccagagtaggtttctattccaatgaaaatccatcattttggtcacatgaaagaagca atctccattggtatagtactctagaaatctgtattatactccaggaaattgttagtaccggtgccctagcatggaatgct gacatcttgtcatctgggagcagagacagactgatatttcagcgggatattcgtacaccgtgtgtggctccagataggaa attaataggacataaacaggaagtttgtggtctgaagtggtcacctgaccatcagcatctggcttcaggtggcaatgaca ataagttatatgtgtggaatatgacgagcactaacccagtacaaacatataatgaacatttagctgcagtgaaagctatt tcctggtctccccaccagcacggattattagccagcggtgggggaacagcagatagatgtatacgtttttggaatactct gacagggcagcctttacagtgtgtagacactggatctcaagtgtgcaatctagcgtggtcaaaacattctaatgaactgg cgatgtcaccagatggagaggccatagtgacaggtgctggggatgagacattacgtttctggaatgtctttagcaagacc aggtctaccaaggaatctaagtcagtgttgaatctcttcacacgcattcgctaa |
Protein
Protein ID | pfu_aug1.0_108.1_50632.t1 |
---|---|
Definition | - |
>pfu_aug1.0_108.1_50632.t1 MDKNIKTDQKNNLPRGLAEFRNDLPDRFLIRQGQLDNRLCSTLQKGPLSLSPRMSPGSPVASPSKDKYGDRFIPSRAGSS WHINFNMSKAVRKISKIPFKVLDAPELQDDFYLNLVDWSSQNVLSVGLGTCVYLWSACTSQVTRLCDLSSDNDTVTSVSW SERGNLVAVGTHKGYVQIWDVAATKKLNTLEGHTARVGFYSNENPSFWSHERSNLHWYSTLEICIILQEIVSTGALAWNA DILSSGSRDRLIFQRDIRTPCVAPDRKLIGHKQEVCGLKWSPDHQHLASGGNDNKLYVWNMTSTNPVQTYNEHLAAVKAI SWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCVDTGSQVCNLAWSKHSNELAMSPDGEAIVTGAGDETLRFWNVFSKT RSTKESKSVLNLFTRIR |