Gene
Gene Model ID | pfu_aug1.0_108.1_50634 |
---|---|
Locus | scaffold108.1 : 62469 ... 74695 : - |
To GenomeBrowser | scaffold108.1:62469..74695 |
Genes list of scaffold | scaffold108.1 |
Synonym | pfu_aug2.0_4.1_13356 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_108.1_50634.t1 | 1 | 1 | Ebp2 | 9 | 278 | 0.0 | 293.4 | 0.0 | 0.0 | 293.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_108.1_50634.t1 | gi|260817991|ref|XP_002603868.1| | hypothetical protein BRAFLDRAFT_70504 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_108.1_50634.t1 |
---|---|
Definition | - |
>pfu_aug1.0_108.1_50634.t1 atgatttctgcactgaatgatttaagtaagcgtaaccttcaagaggcatttgcagcaggaagattaaaaccaggactaag tgtggagcttcctgctaaatctcaagttaataatgtggctggtatgaagcaaaaattaaaggaatttcagaataatttag agtggatagaacggctagatttgaccaatgctccggctccagctgctcctggtatggaactagaaggggaagatgatgta cataatgactttactagggaactcagattttacagacaagcccaagcttcagtattagaaggtatacctcggttacaagc attagatatccaaacaaaacgtcctgaggattactttgcagagatggcaaagtcagacgatcatatgaaaagggtcagag agaaactgttagagaaacaaatgtccatagataggagggaaaaagtgaggaagcagagagatctacgtaaatatggtaaa aaggttcaacaagaagttctgttaaaaagacaaaaagagaagaaagagatgcttgaatctgtgaagagatatagaaaagg tcaacaagataaaatagactttctaaatgatctggatgataagtccgagaaacccagaaataaacaacagagagataata aaaagaacagaattaataagaaaagagaatttaaaaacaaaaagtttggatttggtggacagaagaaacgctccaagatg aacacagcttctagtgcaggagatatgtcagatttcaatccacgattacatcagaaaaaagccggcaaaccaaagggtaa aatggcaaacaaaagacctggtaaatcaaaacggatgaaaaataaaaacaagaagagatga |
Protein
Protein ID | pfu_aug1.0_108.1_50634.t1 |
---|---|
Definition | - |
>pfu_aug1.0_108.1_50634.t1 MISALNDLSKRNLQEAFAAGRLKPGLSVELPAKSQVNNVAGMKQKLKEFQNNLEWIERLDLTNAPAPAAPGMELEGEDDV HNDFTRELRFYRQAQASVLEGIPRLQALDIQTKRPEDYFAEMAKSDDHMKRVREKLLEKQMSIDRREKVRKQRDLRKYGK KVQQEVLLKRQKEKKEMLESVKRYRKGQQDKIDFLNDLDDKSEKPRNKQQRDNKKNRINKKREFKNKKFGFGGQKKRSKM NTASSAGDMSDFNPRLHQKKAGKPKGKMANKRPGKSKRMKNKNKKR |