Gene
| Gene Model ID | pfu_aug1.0_108.1_50634 |
|---|---|
| Locus | scaffold108.1 : 62469 ... 74695 : - |
| To GenomeBrowser | scaffold108.1:62469..74695 |
| Genes list of scaffold | scaffold108.1 |
| Synonym | pfu_aug2.0_4.1_13356 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_108.1_50634.t1 | 1 | 1 | Ebp2 | 9 | 278 | 0.0 | 293.4 | 0.0 | 0.0 | 293.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_108.1_50634.t1 | gi|260817991|ref|XP_002603868.1| | hypothetical protein BRAFLDRAFT_70504 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_108.1_50634.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_108.1_50634.t1 atgatttctgcactgaatgatttaagtaagcgtaaccttcaagaggcatttgcagcaggaagattaaaaccaggactaag tgtggagcttcctgctaaatctcaagttaataatgtggctggtatgaagcaaaaattaaaggaatttcagaataatttag agtggatagaacggctagatttgaccaatgctccggctccagctgctcctggtatggaactagaaggggaagatgatgta cataatgactttactagggaactcagattttacagacaagcccaagcttcagtattagaaggtatacctcggttacaagc attagatatccaaacaaaacgtcctgaggattactttgcagagatggcaaagtcagacgatcatatgaaaagggtcagag agaaactgttagagaaacaaatgtccatagataggagggaaaaagtgaggaagcagagagatctacgtaaatatggtaaa aaggttcaacaagaagttctgttaaaaagacaaaaagagaagaaagagatgcttgaatctgtgaagagatatagaaaagg tcaacaagataaaatagactttctaaatgatctggatgataagtccgagaaacccagaaataaacaacagagagataata aaaagaacagaattaataagaaaagagaatttaaaaacaaaaagtttggatttggtggacagaagaaacgctccaagatg aacacagcttctagtgcaggagatatgtcagatttcaatccacgattacatcagaaaaaagccggcaaaccaaagggtaa aatggcaaacaaaagacctggtaaatcaaaacggatgaaaaataaaaacaagaagagatga |
|
Protein
| Protein ID | pfu_aug1.0_108.1_50634.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_108.1_50634.t1 MISALNDLSKRNLQEAFAAGRLKPGLSVELPAKSQVNNVAGMKQKLKEFQNNLEWIERLDLTNAPAPAAPGMELEGEDDV HNDFTRELRFYRQAQASVLEGIPRLQALDIQTKRPEDYFAEMAKSDDHMKRVREKLLEKQMSIDRREKVRKQRDLRKYGK KVQQEVLLKRQKEKKEMLESVKRYRKGQQDKIDFLNDLDDKSEKPRNKQQRDNKKNRINKKREFKNKKFGFGGQKKRSKM NTASSAGDMSDFNPRLHQKKAGKPKGKMANKRPGKSKRMKNKNKKR |
|