Gene
| Gene Model ID | pfu_aug1.0_1082.1_07795 |
|---|---|
| Locus | scaffold1082.1 : 3807 ... 17385 : - |
| To GenomeBrowser | scaffold1082.1:3807..17385 |
| Genes list of scaffold | scaffold1082.1 |
| Synonym | pfu_aug2.0_1664.1_15180 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1082.1_07795.t1 | 2 | 1 | Glyco_hydro_18 | 8 | 55 | 2.6e-16 | 59.9 | 4.7e-15 | 3.5e-11 | 43.1 |
| pfu_aug1.0_1082.1_07795.t1 | 2 | 2 | Glyco_hydro_18 | 71 | 94 | 2.6e-16 | 59.9 | 2.7e-07 | 0.002 | 17.6 |
| pfu_aug1.0_1082.1_07795.t1 | 2 | 1 | CBM_14 | 208 | 259 | 1.2e-27 | 95.5 | 5.9e-19 | 4.3e-15 | 55.3 |
| pfu_aug1.0_1082.1_07795.t1 | 2 | 2 | CBM_14 | 315 | 367 | 1.2e-27 | 95.5 | 5.4e-16 | 4.0e-12 | 45.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1082.1_07795.t1 | gi|260805432|ref|XP_002597591.1| | hypothetical protein BRAFLDRAFT_281651 [Branchiostoma floridae] | 2.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1082.1_07795.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1082.1_07795.t1 atgacatctgtagctgcaaattacaggcgcgtttgttattacactaactgggctcagtacaggaatggcccgggcaaatt ctaccctgaaaacgtagatcctaatctctgcacgcacgtcatctacgccttcgccaagctgaacggaaatcatttgaagg catttgaatggaacgacgagagtacaccttggatgaagggaatttatttgattcaatttaaggtggactttgtaaagaaa gaaggatacggaggaatcatggtgtgggctctagatttggatgatttcagtggatcatgtggtcagggcaaatatcctct ccttagagcaatcaacgacgaacttaaaagtgccggaaccgcacgtttaacatttgaactactcgccgatattcgcattc gttatacattacgttttcgtcgccgacgtttctcaaaagagaaagaaaacatcgaatatgaaaataaagaacaaaaaatg atgcatatagacgaagttgtcacacctcagccaacagcagctcctcaaccaacaggtgctccccaaccaacgaaccccca actaaccaatccacaaccagtccaaactacacatcacatcggcttaactcagaaattcaactgcaatggaagaacaagtg gtttctatcctgatccaaattcatgtacttcatactatatatgtgctggtgctacaagctttgaagtcacatgcgcatct ggacttaatttcaacccgaagactaaatactgcgactggccaaacaatgttcaatgtaataacaaacccaatccaactca agcacccgccgtaccgcagacgacagtgaaacaaacacaaatgacacagaggctgactcagggtatgactcagaccacta cgtcacagtcacctcctcctgtacagacctatcctgcaataggaactggtgctaatgcattctgtagtagtagaagtgat ggacattacagagatcctcaggactgtggaatgttttatcagtgcgctagtggtctcggcttccatgaaccgtgtccccc tggcacggcattcaatgaaggccttgtagcctgtgattatccctacaaaatcgccgcatgtagatcgtacacaggcagaa aataa |
|
Protein
| Protein ID | pfu_aug1.0_1082.1_07795.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1082.1_07795.t1 MTSVAANYRRVCYYTNWAQYRNGPGKFYPENVDPNLCTHVIYAFAKLNGNHLKAFEWNDESTPWMKGIYLIQFKVDFVKK EGYGGIMVWALDLDDFSGSCGQGKYPLLRAINDELKSAGTARLTFELLADIRIRYTLRFRRRRFSKEKENIEYENKEQKM MHIDEVVTPQPTAAPQPTGAPQPTNPQLTNPQPVQTTHHIGLTQKFNCNGRTSGFYPDPNSCTSYYICAGATSFEVTCAS GLNFNPKTKYCDWPNNVQCNNKPNPTQAPAVPQTTVKQTQMTQRLTQGMTQTTTSQSPPPVQTYPAIGTGANAFCSSRSD GHYRDPQDCGMFYQCASGLGFHEPCPPGTAFNEGLVACDYPYKIAACRSYTGRK |
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