Gene
| Gene Model ID | pfu_aug1.0_1084.1_65785 |
|---|---|
| Locus | scaffold1084.1 : 67962 ... 88065 : - |
| To GenomeBrowser | scaffold1084.1:67962..88065 |
| Genes list of scaffold | scaffold1084.1 |
| Synonym | pfu_aug2.0_1460.1_01639 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1084.1_65785.t1 | 1 | 1 | Retrotrans_gag | 93 | 180 | 1.1e-06 | 28.6 | 2.1e-09 | 3.1e-06 | 27.1 |
| pfu_aug1.0_1084.1_65785.t1 | 1 | 1 | RVP | 310 | 403 | 1.6e-07 | 31.1 | 5.3e-10 | 7.9e-07 | 28.9 |
| pfu_aug1.0_1084.1_65785.t1 | 1 | 1 | Asp_protease_2 | 311 | 395 | 5.1e-06 | 26.8 | 8.1e-09 | 1.2e-05 | 25.7 |
| pfu_aug1.0_1084.1_65785.t1 | 1 | 1 | Chromo | 691 | 729 | 1.4e-07 | 31.0 | 2.8e-10 | 4.2e-07 | 29.5 |
Transcript
| Transcript ID | pfu_aug1.0_1084.1_65785.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1084.1_65785.t1 atgacacataattacgaacttcgatctaagaaaatggcaacaggaggaaaagagacaagtgaaagtgcaggagaaaatat taatatggaggaattaataaacggactaagccaagctttaagaaaaagttcgtctggcggaaatgcgaacatttcaatag aaacatttagaggaaatcctgaggacgatgccaataaatggttagaaaaatttgaggcatgggtcgcattcaacggatgg acaaatgagccagaaaaagtcgccagtgccttacgattaaaattagacggagccgcactttcgtggtttcgcggactgtc cagtgccattgtaggaaacacggcaacactattcgataaattcaggcattactttaatacattacacccaacatggatgc ttgagcaacaactctatgacaggacaatgggatccgaagaaaatctggagtcgtacatcactgatgtcgaagcaagatgc caacggcttaataaagcagaacaggagaagacgactgctttcataagaggattgaatccgtctctccgcatgttcgtgat tcagaagaacccaggttcgtttagagaagcagtccaatcggccagactagcgaaggaatctatgacgatgtcaaacccaa cacagacggaagtaatgcgctcaatagaacaacaagggaaggcaatcgcagatctgaccaccgtgttatgtcagatgaaa gacaggaacgatccgtccgtaaaaagaactcgcgacgttaagtgccaactatgtagcaaaaacggacacgaggcacaaga atgccgacaattttctgtatccagacgcgaggacaagaatcgcgacagaaacaagcagtgttttaagtgcctgacgtacg gacatatcgcccgcaattgtcctggaaatcagggaaattttggtacttatcatacaaatgtcatgattgatacaggtgct gatatatgtgtagcaaatcctagatttttgaatgctttgcagtcgaaaggagtcaaggtctttattgagacttctgataa gaaagctattgtaactgcaaataatcagaaggttcacattgagaaaagtatctctgtaaatatgtatatagatcaagtag aaactagagtcaaattttatttggttccaggtttagaacccaccgtaattttgggtatggactttttgaataagcatggt gcagtcatagatttttcaaagaaaactataaaattcgatcctaggcgtcaattagttacagaatctgaagtaattgtacc acctcattcagaaattgttactattgcaaaaattaagggagcaaaattgccagattctgttattggtttaacatctgaat gtccgtctctttcctctcatggtttattagcaggaaaagttatggctaaaataaatgataacactgttttgcatagatta tgtaatgtgaatgatcaacctgtaacaattaaaaagaacacgcatataggtaaattcgtgtgcatatcagacaaggatag ggtatttcgattgcgagatcagacggatcctgctgtgcggaatgcgggagacagtcgcaataacggtacaataccacacg tccaaggtgatgacctgacggaaagcgagaaattgaaattacatacggttattgaggaataccgtgatgtatttgctgat aaaaacgggagattaggtcaatgtgatatgctgaaacatgaaattaaagtacctagtgatcaaaaaccgattcgacaacg accatacaaaatgggtgcaaaacaaaaagaagtcttggaaaccatggtcactgagatgttagatgacggaataattgaac ctagtctgagacgtaaatgtgatggaaaattaataaagaaccgaatccatgtagatcgtctgaaacatggatacatgtgg tcaactgaaccgattgattcgacgtcaccggaccgcttatctgaaaacgcttatcttaatgaagatgaaataccaccgag caattgcgaccagacatttcataacgaagataattcaatagatgatacgaaatcaaatactgatgacgtttacgccatag aaaagattattcgcaaaaagaaagttaacggcaaatggacataccgagtgaaatggcaagatttcgactcaaaacataat tcatgggtcaaattcgacgatcttactccagagttcatagtgtactctacagtcaaggtgtactctacagtcaaggtgta ctctacagtcgtggtgtactatacagtcatagtgtactctacagtcaaggtgtactctacattcaaggtgtactttacag tcaaggtgtactctacagtcgtggtgtactctacagtcatagtgtactctacagtcaaggtgtactctacagtcaaggtg tactatacagtcgtggtgtactatacagtcatagtgtactctacagtcaaggtgactctaccgtcatgcacaaaatcgat gcctcagtatcgtgacaatcggttactgaacctagaaaatttgtcatcaaaattgcagtgttcagcaagttcgtgtaaag tacggataaagcattctaccgactctccaggattctgtacacgaagatccacagtcgtgatgtcagaatcaagccctgaa aagagagcttggaggaaagagacgaataagggcgagggcgaatccagtccaaagggaaaggaaaggaaccagggttaccg gaaccaaggccaccacacctgtaccttcaaccagggttaccagaaccaaggccaccacaactgtcccttcaaccaacaga accaaggccatcagacctgtcccttcaaccaacagaaccaaggccatcagacctgtcccttcaaccagcaaaaccaaggc catcagacctgtgccttcaaccataagaaccaaggctactacaccccctga |
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Protein
| Protein ID | pfu_aug1.0_1084.1_65785.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1084.1_65785.t1 MTHNYELRSKKMATGGKETSESAGENINMEELINGLSQALRKSSSGGNANISIETFRGNPEDDANKWLEKFEAWVAFNGW TNEPEKVASALRLKLDGAALSWFRGLSSAIVGNTATLFDKFRHYFNTLHPTWMLEQQLYDRTMGSEENLESYITDVEARC QRLNKAEQEKTTAFIRGLNPSLRMFVIQKNPGSFREAVQSARLAKESMTMSNPTQTEVMRSIEQQGKAIADLTTVLCQMK DRNDPSVKRTRDVKCQLCSKNGHEAQECRQFSVSRREDKNRDRNKQCFKCLTYGHIARNCPGNQGNFGTYHTNVMIDTGA DICVANPRFLNALQSKGVKVFIETSDKKAIVTANNQKVHIEKSISVNMYIDQVETRVKFYLVPGLEPTVILGMDFLNKHG AVIDFSKKTIKFDPRRQLVTESEVIVPPHSEIVTIAKIKGAKLPDSVIGLTSECPSLSSHGLLAGKVMAKINDNTVLHRL CNVNDQPVTIKKNTHIGKFVCISDKDRVFRLRDQTDPAVRNAGDSRNNGTIPHVQGDDLTESEKLKLHTVIEEYRDVFAD KNGRLGQCDMLKHEIKVPSDQKPIRQRPYKMGAKQKEVLETMVTEMLDDGIIEPSLRRKCDGKLIKNRIHVDRLKHGYMW STEPIDSTSPDRLSENAYLNEDEIPPSNCDQTFHNEDNSIDDTKSNTDDVYAIEKIIRKKKVNGKWTYRVKWQDFDSKHN SWVKFDDLTPEFIVYSTVKVYSTVKVYSTVVVYYTVIVYSTVKVYSTFKVYFTVKVYSTVVVYSTVIVYSTVKVYSTVKV YYTVVVYYTVIVYSTVKVTLPSCTKSMPQYRDNRLLNLENLSSKLQCSASSCKVRIKHSTDSPGFCTRRSTVVMSESSPE KRAWRKETNKGEGESSPKGKERNQGYRNQGHHTCTFNQGYQNQGHHNCPFNQQNQGHQTCPFNQQNQGHQTCPFNQQNQG HQTCAFNHKNQGYYTP |
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