Gene
| Gene Model ID | pfu_aug1.0_10840.1_60817 |
|---|---|
| Locus | scaffold10840.1 : 2616 ... 30462 : + |
| To GenomeBrowser | scaffold10840.1:2616..30462 |
| Genes list of scaffold | scaffold10840.1 |
| Synonym | pfu_aug2.0_1321.1_04960 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10840.1_60817.t1 | 4 | 1 | TPR_11 | 93 | 107 | 3.1e-09 | 36.3 | 0.19 | 290.0 | 1.2 |
| pfu_aug1.0_10840.1_60817.t1 | 4 | 2 | TPR_11 | 93 | 108 | 3.1e-09 | 36.3 | 0.17 | 250.0 | 1.4 |
| pfu_aug1.0_10840.1_60817.t1 | 3 | 1 | TPR_2 | 93 | 108 | 1.0e-08 | 34.3 | 0.26 | 390.0 | 1.3 |
| pfu_aug1.0_10840.1_60817.t1 | 3 | 1 | TPR_8 | 93 | 107 | 1.5e-07 | 30.7 | 0.072 | 110.0 | 2.9 |
| pfu_aug1.0_10840.1_60817.t1 | 3 | 2 | TPR_8 | 113 | 143 | 1.5e-07 | 30.7 | 0.0057 | 8.5 | 6.4 |
| pfu_aug1.0_10840.1_60817.t1 | 4 | 3 | TPR_11 | 114 | 175 | 3.1e-09 | 36.3 | 7.1e-11 | 1.0e-07 | 31.4 |
| pfu_aug1.0_10840.1_60817.t1 | 3 | 2 | TPR_2 | 114 | 144 | 1.0e-08 | 34.3 | 0.00023 | 0.34 | 10.9 |
| pfu_aug1.0_10840.1_60817.t1 | 1 | 1 | TPR_19 | 122 | 179 | 5.4e-06 | 26.6 | 1.3e-08 | 2.0e-05 | 24.8 |
| pfu_aug1.0_10840.1_60817.t1 | 3 | 3 | TPR_2 | 147 | 177 | 1.0e-08 | 34.3 | 5.5e-06 | 0.0081 | 16.0 |
| pfu_aug1.0_10840.1_60817.t1 | 3 | 3 | TPR_8 | 147 | 177 | 1.5e-07 | 30.7 | 5.3e-07 | 0.00079 | 19.0 |
| pfu_aug1.0_10840.1_60817.t1 | 4 | 4 | TPR_11 | 194 | 211 | 3.1e-09 | 36.3 | 0.95 | 1400.0 | -1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10840.1_60817.t1 | gi|354480685|ref|XP_003502535.1| | PREDICTED: tetratricopeptide repeat protein 27 isoform X2 [Cricetulus griseus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10840.1_60817.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10840.1_60817.t1 atgaagacgcgacagctagaggtgttagcagttggagcagcatgtttacagatgtttgtacagaacaactggctgggacc gctaagtcacggagaggccaaggatctcctaccgcaaggattctctgacccagaaaagtacaaggccttgatcagccaca tacaaacagaactgagctgtgacggtgaatccatatatgaactctgtataggaatagagtatctctacatggctagatgt atactgctcaactgtcatcagcatctgacaggattacagtataagaagagtatggaatgttttgagctgtcactgaaagt taattccctgcagatacctgtgtggtatgtgtatggttgtgttgctttagccgcggaggattttaccacagctatgaagg cgtttaaaagatgtgtcaatttagaaactgataatttcgaggcttggaataatttatctattgcctacataaagctgaag gataagcccaaggcatatgtaacacttaaagaagccattaagtgtaactatggaaactggagactttgggagaatttatt aattatagccacagatgttggtgaatttcaggattccatcctgtcgtacaacagattgatggatctgaaagaaaaatgga cggatgaaaaagcactagaaatactggtagcggctgtaacgggaggatatgatgattctaagggacatccagcatctagg tatagcaacaaactactagaactgtttggcaggattacagcaaaggtgacaggtagtggaaagatttggaatctgtacgc caagttaacaactgctgtcaaaaagccatcacctgaagtctcacaaatggttttacagttcctacagaaatcacataggt gtgacacacaggacacaaactggcaaaaggatgtggataagtgtaaaaatgttggagaggaatcaatacacttagctgat acatatatacaaagttgtgagaaggaatcgtctaaagatcaagccttacaaatgatgtcctcagccaaactaatgatgaa aggtgtcattacaaagatcaagatgtctcgaagaacgtacaattgtgctgtaaaacaacctcctcactgtcagatgacct cacacaatcaagaccgcaaaacgaaggggcccagcaacacagatgaatatgtaaatggatataaaaagagggcttgcgta atacagtccgtgctctgccggctgtag |
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Protein
| Protein ID | pfu_aug1.0_10840.1_60817.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10840.1_60817.t1 MKTRQLEVLAVGAACLQMFVQNNWLGPLSHGEAKDLLPQGFSDPEKYKALISHIQTELSCDGESIYELCIGIEYLYMARC ILLNCHQHLTGLQYKKSMECFELSLKVNSLQIPVWYVYGCVALAAEDFTTAMKAFKRCVNLETDNFEAWNNLSIAYIKLK DKPKAYVTLKEAIKCNYGNWRLWENLLIIATDVGEFQDSILSYNRLMDLKEKWTDEKALEILVAAVTGGYDDSKGHPASR YSNKLLELFGRITAKVTGSGKIWNLYAKLTTAVKKPSPEVSQMVLQFLQKSHRCDTQDTNWQKDVDKCKNVGEESIHLAD TYIQSCEKESSKDQALQMMSSAKLMMKGVITKIKMSRRTYNCAVKQPPHCQMTSHNQDRKTKGPSNTDEYVNGYKKRACV IQSVLCRL |
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