Gene
| Gene Model ID | pfu_aug1.0_10927.1_53624 |
|---|---|
| Locus | scaffold10927.1 : 12114 ... 28915 : - |
| To GenomeBrowser | scaffold10927.1:12114..28915 |
| Genes list of scaffold | scaffold10927.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-HES2 |
| Description | Best hit to EAW78058 hairy and enhancer of split 1, (Drosophila) [Homo sapiens] with 8e-14 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein does not have a Hairy_orange domain. The predicted protein from corresponding EST has a WRPW motif. This annotation is based on NJ, ML, and BI. pfu_aug0.92_10927.1_32463 and pfudmixc24870g05243 were used for analyses. |
| mRNA evidence | pfudmixc24870g05243 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10927.1_53624.t1 | 1 | 1 | HLH | 71 | 99 | 5.6e-07 | 29.1 | 6.0e-11 | 9.0e-07 | 28.5 |
Transcript
| Transcript ID | pfu_aug1.0_10927.1_53624.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10927.1_53624.t1 atgattgacgggagaagagaaattgctaactttcccacgagagagtaccgtgcgtatgtttttccctgttttgacatgaa agcaacaggtattttatcaaacggagggcgcgtgaccgagccattccttaccattccttcacatgacaaaatggaggaac aagaaaaagccatgaattccgataaagtatcatccacagcatccgagggacgaaaaagttctaaacctataatggagaag aggagacgagcacgaatcaacgccagtctggcagagttaaagtctctgcttctagaggtcatgaaatccgagtcaatatt cgatcaatctttgatttgcttgaatattgatttaccttttatgactaagccaaatgttgaagatattgaaaggaaaaaaa agaacatggaaggaatttatcggaatgcctttacaaatacgtgtacaaatgtggatgaaaaagtaaatgtgaagcatcag ttgtatttgcaacggaacgcgccaaaacaaaatggagaaggcggacatattggaaatgacagtgcgccatctacgtcagt tacaacatcaacagatatcaggattgttgcaggttga |
|
Protein
| Protein ID | pfu_aug1.0_10927.1_53624.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10927.1_53624.t1 MIDGRREIANFPTREYRAYVFPCFDMKATGILSNGGRVTEPFLTIPSHDKMEEQEKAMNSDKVSSTASEGRKSSKPIMEK RRRARINASLAELKSLLLEVMKSESIFDQSLICLNIDLPFMTKPNVEDIERKKKNMEGIYRNAFTNTCTNVDEKVNVKHQ LYLQRNAPKQNGEGGHIGNDSAPSTSVTTSTDIRIVAG |
|