Gene
| Gene Model ID | pfu_aug1.0_10993.1_17707 |
|---|---|
| Locus | scaffold10993.1 : 13436 ... 40998 : + |
| To GenomeBrowser | scaffold10993.1:13436..40998 |
| Genes list of scaffold | scaffold10993.1 |
| Synonym | pfu_aug2.0_231.1_03851 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10993.1_17707.t1 | 2 | 1 | ABC_membrane | 2 | 95 | 9.4e-13 | 48.1 | 0.011 | 24.0 | 4.2 |
| pfu_aug1.0_10993.1_17707.t1 | 2 | 2 | ABC_membrane | 108 | 214 | 9.4e-13 | 48.1 | 8.5e-15 | 1.8e-11 | 43.9 |
| pfu_aug1.0_10993.1_17707.t1 | 1 | 1 | Transposase_1 | 384 | 455 | 4.4e-15 | 55.2 | 6.0e-18 | 1.3e-14 | 53.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10993.1_17707.t1 | gi|258568002|ref|XP_002584745.1| | transporter ATM1 [Uncinocarpus reesii 1704] | 6.02558e-44 |
Transcript
| Transcript ID | pfu_aug1.0_10993.1_17707.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10993.1_17707.t1 atgctggtaccatttactttcaaattcatagtggatgcattgaatgatgctaacttaacaaagactggagaaactttgct gtcactagaatgtcctaaagactgggtcttagctgctgttataggctatgctgctatgaggattggaacatcagttttcc aagagtcccgaaatgctatttttagctttgtagctcagagttctatgcagaaagttgccggagatgtgttttctagcctc cacagatctgataaagcctttatacatgataacagtccagcaggcctatgtgatgatattagcaggggaacaaagtctga gttttcaaaagagaggaatcgacgagacaaacagactgtggtgcaagctgctgaatcactagacaactatgatacagtca agtactttaacaatgaggagcatgaaatacaggagtacaaaaagatatggagaaagtacatgcaagctcaacttaaaact atgagaagtttagccttgttaaacacttcccagaacttaatctacaatgttggtgtcggcattcttatgggattagctgt taatcaaattaagtctggtggtatgactgtcggagacctggtcatggtcaatggtttactgttccagttgaatgcacagt taaactttgtaggctccacgtacagggacattaaacaatctgatattgacatagctaacatgtttaatcttaagaagcta cactctactatacagttcatgaatgctgctggagatggaccaaacatatcaaggtctatgatgtataaatggtacaagcg atttcaagatggaagggtagatatcaacgatgacgaaaggtcaggtcgagttaaaacagcagacaaacagttggcaaatg acatcgtatcttcccttgataatgatcggcgtttgacggtaagagaaatcgctgaacatcatgatattgggattgggact gcgcatagaattgttacaggaacactaggatttcagagacttagtgcacgatgggttccccggttgctatcggatgatga aaaaagacgacgagttgaagcatcgacaagtttcttgcgacgatggaagagagagggtgatcgatttcttgatcgcataa ttacgacagacgaaacatggctgtatttttacgatcctgagaccaaacaacaatcaagcatgtggaaacgacatggatca ccgcccccaaaaaaggcaaaagtcacccgttcacagggaaaacatatgttcatcatgttcatggatagacgaggaatgat tctaacacatgcagtgccaagaggtcagacagtaaatgctgcttattattcaaaggaaataatgtcaaatctgaaggaag ctacaataggaaaaaccaccctagtgattgcccatagactgtccacagttgtagactgtgacttaattcttgtgttagat aaaggccgaatcgtagagcagggaactcattacgaactcctctccaacccccacagtatttacacatccatgtggaacgt ccaaagtcagttaccaacaaatctagataacttgaaaaaggaaacagagggagcttga |
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Protein
| Protein ID | pfu_aug1.0_10993.1_17707.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10993.1_17707.t1 MLVPFTFKFIVDALNDANLTKTGETLLSLECPKDWVLAAVIGYAAMRIGTSVFQESRNAIFSFVAQSSMQKVAGDVFSSL HRSDKAFIHDNSPAGLCDDISRGTKSEFSKERNRRDKQTVVQAAESLDNYDTVKYFNNEEHEIQEYKKIWRKYMQAQLKT MRSLALLNTSQNLIYNVGVGILMGLAVNQIKSGGMTVGDLVMVNGLLFQLNAQLNFVGSTYRDIKQSDIDIANMFNLKKL HSTIQFMNAAGDGPNISRSMMYKWYKRFQDGRVDINDDERSGRVKTADKQLANDIVSSLDNDRRLTVREIAEHHDIGIGT AHRIVTGTLGFQRLSARWVPRLLSDDEKRRRVEASTSFLRRWKREGDRFLDRIITTDETWLYFYDPETKQQSSMWKRHGS PPPKKAKVTRSQGKHMFIMFMDRRGMILTHAVPRGQTVNAAYYSKEIMSNLKEATIGKTTLVIAHRLSTVVDCDLILVLD KGRIVEQGTHYELLSNPHSIYTSMWNVQSQLPTNLDNLKKETEGA |
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