Gene
Gene Model ID | pfu_aug1.0_11.1_50544 |
---|---|
Locus | scaffold11.1 : 70157 ... 83085 : - |
To GenomeBrowser | scaffold11.1:70157..83085 |
Genes list of scaffold | scaffold11.1 |
Synonym | pfu_aug2.0_350.1_00646 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | TGF beta type 1 receptor |
Description | NCNI best hit to CAD20573.1 (transforming growth factor-beta type 1-like receptor, Crassostrea gigas) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_11.1_50544.t1 | 1 | 1 | TGF_beta_GS | 12 | 37 | 3.7e-14 | 51.7 | 1.5e-17 | 7.2e-14 | 50.8 |
pfu_aug1.0_11.1_50544.t1 | 2 | 1 | Pkinase_Tyr | 39 | 152 | 1.3e-18 | 67.0 | 9.0e-19 | 4.4e-15 | 55.4 |
pfu_aug1.0_11.1_50544.t1 | 2 | 1 | Pkinase | 40 | 153 | 3.2e-31 | 108.4 | 1.2e-24 | 5.9e-21 | 74.7 |
pfu_aug1.0_11.1_50544.t1 | 2 | 2 | Pkinase | 175 | 276 | 3.2e-31 | 108.4 | 1.3e-11 | 6.6e-08 | 32.0 |
pfu_aug1.0_11.1_50544.t1 | 2 | 2 | Pkinase_Tyr | 249 | 277 | 1.3e-18 | 67.0 | 9.0e-05 | 0.44 | 9.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_11.1_50544.t1 | gi|21388592|emb|CAD20573.1| | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_11.1_50544.t1 |
---|---|
Definition | - |
>pfu_aug1.0_11.1_50544.t1 atgccgtttattcagccgggacaaaataccgataccatacgggaaatgatatacgagtattcaggatcagggtccgggtt acctctcttggttcagagaactattgcccgacaaatccagctttgtgaaattatcggtaaaggtcgattcggtgaagtgt ggaggggaagatggcgagcagaaagcgtagcagtaaaaatattctcatctcgagaggagaggtcgtggttcagagaagcc gagatttaccagaccgtgatgcttagacacgaaaacattcttggttttattgctgctgataacaaagataacggtacatg gacacaattatggttgatcacagattatcatgagaacggttcattgttcgactatttaaatagaacatcagtcacggtat ctggtatgatacgtttagctttatccacagcatgtggattagctcatctccacatggatattgtgggaacagaaggcttg gcagtacggcacgacccgatcaaggattctgtcgacctcgctccgtcagacagagtgggaacaaagcggtatatggcacc agaagttctcgatggttcgatcaatatgaaccattttgagtcgtttaagagaggtatagttgaggactaccagctcccat tctgggacatcgtgccatctgacccgagcctagaggagatgagaaaagttgtatgtgatgatcgtcaacgacccggcgtc cctaacagatggcagactattgagagtctacgggtaatggctcgcctgatgaaagaatgctggtatcagaaccccgcagc aagactgactacgctacgtatcaaaaagacgttaaccagtctcgctcaagcagaggaccttaaggaatacaaaaacattt aa |
Protein
Protein ID | pfu_aug1.0_11.1_50544.t1 |
---|---|
Definition | - |
>pfu_aug1.0_11.1_50544.t1 MPFIQPGQNTDTIREMIYEYSGSGSGLPLLVQRTIARQIQLCEIIGKGRFGEVWRGRWRAESVAVKIFSSREERSWFREA EIYQTVMLRHENILGFIAADNKDNGTWTQLWLITDYHENGSLFDYLNRTSVTVSGMIRLALSTACGLAHLHMDIVGTEGL AVRHDPIKDSVDLAPSDRVGTKRYMAPEVLDGSINMNHFESFKRGIVEDYQLPFWDIVPSDPSLEEMRKVVCDDRQRPGV PNRWQTIESLRVMARLMKECWYQNPAARLTTLRIKKTLTSLAQAEDLKEYKNI |