Gene
| Gene Model ID | pfu_aug1.0_11033.1_03011 |
|---|---|
| Locus | scaffold11033.1 : 2784 ... 8675 : - |
| To GenomeBrowser | scaffold11033.1:2784..8675 |
| Genes list of scaffold | scaffold11033.1 |
| Synonym | pfu_aug2.0_5316.1_22662 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to FR715657 (MgC1q78). 87 bits, 3e-15 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11033.1_03011.t1 | 2 | 1 | C1q | 45 | 132 | 2.94273e-44 | 150.1 | 7.3e-20 | 3.6e-16 | 59.3 |
| pfu_aug1.0_11033.1_03011.t1 | 2 | 2 | C1q | 181 | 303 | 2.94273e-44 | 150.1 | 7.0e-30 | 3.5e-26 | 91.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11033.1_03011.t1 | gi|325504455|emb|CBX41727.1| | putative C1q domain containing protein MgC1q78 [Mytilus galloprovincialis] | 3.0e-15 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_11033.1_03011.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11033.1_03011.t1 atgattcgacggatttcattattcctgttgtgtacaatgttaacatcattttctgtttatgccacggcaaaatatcagaa gcataccaaacttgaacttttaaaggaagttattggaagatatttcagcgagttcgtgatcgacctcacacagagacttt ctaacgtgaatgccatggtaataaaatttgactcagttttgacaaatgaaggtaacgcgtatgacaaaaccactggaaca ttcacagctccgatgaatgggatgtacctgttctcctggaatgttatgtcgtacgctggaaagaaagcacacgcttatct ctatgtaaacaataatgcaaaatggctgagctacgctgacaatggtccacaggagtacgataccggaagtggaacgttgt ccaccaatcatattgccaagagtcattttatccgtgcaacgacataccaaaaacaaactaaacttgagcttttgaaggaa attgtcgggagattcttcggtgacgtcgaaggagtttgcgagcgacctctgcctaagattgcatttgcagttgtactctc caaagtcctttcaaatgtgaatgcaatggtgttaaaatttgattccattttgaccaatgagggcaatggatacaataaaa acactggggtattcacagctccttcagccgggatgtatctgttttcatggcatattttgtctcattcgggaaagaaagct cgtgtttatctctataaaaacaacaatcaaacctgggttagctatgcagatgacggcccacaaggatatgataccggaag tgctacagtcatcctacgcctcaagaagggtgataaagtagatctacgcacagtggaaagtggcaactaccttcatagtg gcttctctacctttactggaaccttgttataccgttag |
|
Protein
| Protein ID | pfu_aug1.0_11033.1_03011.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11033.1_03011.t1 MIRRISLFLLCTMLTSFSVYATAKYQKHTKLELLKEVIGRYFSEFVIDLTQRLSNVNAMVIKFDSVLTNEGNAYDKTTGT FTAPMNGMYLFSWNVMSYAGKKAHAYLYVNNNAKWLSYADNGPQEYDTGSGTLSTNHIAKSHFIRATTYQKQTKLELLKE IVGRFFGDVEGVCERPLPKIAFAVVLSKVLSNVNAMVLKFDSILTNEGNGYNKNTGVFTAPSAGMYLFSWHILSHSGKKA RVYLYKNNNQTWVSYADDGPQGYDTGSATVILRLKKGDKVDLRTVESGNYLHSGFSTFTGTLLYR |
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