Gene
Gene Model ID | pfu_aug1.0_11033.1_03013 |
---|---|
Locus | scaffold11033.1 : 19190 ... 31035 : - |
To GenomeBrowser | scaffold11033.1:19190..31035 |
Genes list of scaffold | scaffold11033.1 |
Synonym | pfu_aug2.0_2031.1_05380 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_11033.1_03013.t1 | 1 | 1 | Helicase_C | 142 | 216 | 3.5e-23 | 81.2 | 8.8e-27 | 6.5e-23 | 80.3 |
pfu_aug1.0_11033.1_03013.t1 | 2 | 1 | DUF4217 | 158 | 173 | 4.9e-21 | 74.0 | 0.24 | 1800.0 | -1.5 |
pfu_aug1.0_11033.1_03013.t1 | 2 | 2 | DUF4217 | 257 | 318 | 4.9e-21 | 74.0 | 2.3e-24 | 1.7e-20 | 72.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_11033.1_03013.t1 | gi|327276052|ref|XP_003222785.1| | PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX55 [Anolis carolinensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
>Adult tissues | |
Dshape | 1 |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_11033.1_03013.t1 |
---|---|
Definition | - |
>pfu_aug1.0_11033.1_03013.t1 atgaagaatgattcaatgtgggttgtttccgaaatgtacgtaacttgtctgtatggtgctgatagcatgtatgcattctc atcgaaatgcaagctgcatacacgagtacatgttgatattctgaagtctggaccaatgtctcttcttatggcaataatcc attgtttgacggatgaagttgagaagttgattcgagctggtttaaggaatcctgttaggattaacgtgaaagagaagaag acaaaagatagcccagaagtgtcacaaaggactccctcaactctcgataacttctacatgatagtagaaagtgacaaaaa gtttaatcagctcatgtattttctacagcaacacaagaaagagaaagtcatgatgtttattagtacatgtgcaggtgttg aatacttttcgaaattactgcagctgctactaaaaaatactcaggttttgtgcatccatggcaaaatgaaacagaagagg aataagatattttcacagtttcgaaagcttgattatggtgtattaatctgcacagacgttatggctcgaggaattgatat tccagaagtcaactgggtcattcagtatgaccctccaagtactgccacgtccttcgtgcatagatgtggccgtacagcaa gaattggtcaccatggaaacgctttagttttcttacttccctcagaggatagttacgtcaatttcttaagcataaatcaa aaagtgccacttaaacagctcagtgaagtatctgatgtgcataattacattccaaaaataaggaaagtgtcaagcaaaga tagggctatatttgaaaaagggacaaaagcttatgtgtcctttgtgcagttttatgctaaacatgagtgcagcttaatat ttcagttaaaagaattagatttaggaaagcttgccgtgggatatggactattgaaaatacccaaaatgccagaaacaaaa ggaaaggatttcccaaattttcaacctgtagatattgacctatcttccattgcatttaagtaa |
Protein
Protein ID | pfu_aug1.0_11033.1_03013.t1 |
---|---|
Definition | - |
>pfu_aug1.0_11033.1_03013.t1 MKNDSMWVVSEMYVTCLYGADSMYAFSSKCKLHTRVHVDILKSGPMSLLMAIIHCLTDEVEKLIRAGLRNPVRINVKEKK TKDSPEVSQRTPSTLDNFYMIVESDKKFNQLMYFLQQHKKEKVMMFISTCAGVEYFSKLLQLLLKNTQVLCIHGKMKQKR NKIFSQFRKLDYGVLICTDVMARGIDIPEVNWVIQYDPPSTATSFVHRCGRTARIGHHGNALVFLLPSEDSYVNFLSINQ KVPLKQLSEVSDVHNYIPKIRKVSSKDRAIFEKGTKAYVSFVQFYAKHECSLIFQLKELDLGKLAVGYGLLKIPKMPETK GKDFPNFQPVDIDLSSIAFK |