Gene
| Gene Model ID | pfu_aug1.0_11046.1_17712 |
|---|---|
| Locus | scaffold11046.1 : 5056 ... 15934 : - |
| To GenomeBrowser | scaffold11046.1:5056..15934 |
| Genes list of scaffold | scaffold11046.1 |
| Synonym | pfu_aug2.0_517.1_24128 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11046.1_17712.t1 | 2 | 1 | AAA_25 | 89 | 115 | 7.5e-06 | 25.4 | 5.7e-05 | 0.021 | 14.2 |
| pfu_aug1.0_11046.1_17712.t1 | 1 | 1 | AAA_22 | 92 | 203 | 2.9e-08 | 33.9 | 2.0e-10 | 7.1e-08 | 32.6 |
| pfu_aug1.0_11046.1_17712.t1 | 1 | 1 | AAA_17 | 93 | 121 | 4.1e-07 | 30.8 | 3.1e-09 | 1.1e-06 | 29.4 |
| pfu_aug1.0_11046.1_17712.t1 | 1 | 1 | AAA | 94 | 239 | 2.5e-31 | 108.5 | 1.1e-33 | 4.1e-31 | 107.9 |
| pfu_aug1.0_11046.1_17712.t1 | 1 | 1 | AAA_18 | 94 | 160 | 5.9e-07 | 29.8 | 3.0e-09 | 1.1e-06 | 28.9 |
| pfu_aug1.0_11046.1_17712.t1 | 2 | 2 | AAA_25 | 144 | 218 | 7.5e-06 | 25.4 | 0.0021 | 0.77 | 9.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11046.1_17712.t1 | gi|260819230|ref|XP_002604940.1| | hypothetical protein BRAFLDRAFT_58489 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_11046.1_17712.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11046.1_17712.t1 atgtacaaataccggtataatggtatagacctgactgatgggaatatacagcttcatgtctttcaattacaaaacgacgg tccgggtacggaggagttggatgatgaggatctcgcggcagccagccattggatattaccggccggggagttcaatggga tctgggaaagtcttgtctttgacgatgaagttaaacataggctgttgaattatgcaacaacaacgctattattctcagac agacaagttgacaacacaatcataacatggaataaagtgatattattacatggaccacctggtacagggaaaacatccct ttgtaaagccctcgcccagaaactggttatacgactgtccagtagatacaagtacggacagctaatagaaatcaacagtc acagtctctgctcaaagtggttctctgagagtggtaagctggtgatgaagatgtttcagaagatacaggagttaatagat gatcctgacgccttggtctttgttctcatagacgaggtggagagtttaacagcagccaggaaaagttcaatgtctggttc tgacccgtccgatgccattagagtcgtgaacgctttactcactcagctagatcagattaaaagatttcccaatgtgatga tccttaccacctctaacgtgacaggagctatagatctggcctttgtagatagagcagacattaaacagtatataggacct ccctcaccagaggccatattcaaaatatatcactcctgtatacaggaactgatgagggtgggtataatcttcccagagga gcagatttttgatttgcgtgcgttgactgtgatgagatttatagagaatgatgccaccaggaacagcctacagttaagag agatatcgaggcaaagttatggtttgagtggcaggtctttacggaaattaccattcattgctcatgcaatgtatttacaa agtgctcaagtacctttaaccagatttttggactctttaaacaaagctgtgcaacgacagtttcaagagagagaggatct gaccaaggactcttaa |
|
Protein
| Protein ID | pfu_aug1.0_11046.1_17712.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11046.1_17712.t1 MYKYRYNGIDLTDGNIQLHVFQLQNDGPGTEELDDEDLAAASHWILPAGEFNGIWESLVFDDEVKHRLLNYATTTLLFSD RQVDNTIITWNKVILLHGPPGTGKTSLCKALAQKLVIRLSSRYKYGQLIEINSHSLCSKWFSESGKLVMKMFQKIQELID DPDALVFVLIDEVESLTAARKSSMSGSDPSDAIRVVNALLTQLDQIKRFPNVMILTTSNVTGAIDLAFVDRADIKQYIGP PSPEAIFKIYHSCIQELMRVGIIFPEEQIFDLRALTVMRFIENDATRNSLQLREISRQSYGLSGRSLRKLPFIAHAMYLQ SAQVPLTRFLDSLNKAVQRQFQEREDLTKDS |
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