Gene
| Gene Model ID | pfu_aug1.0_1105.1_58365 |
|---|---|
| Locus | scaffold1105.1 : 1 ... 10728 : + |
| To GenomeBrowser | scaffold1105.1:1..10728 |
| Genes list of scaffold | scaffold1105.1 |
| Synonym | pfu_aug2.0_204.1_13793 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1105.1_58365.t1 | 6 | 1 | Clathrin | 40 | 177 | 0.0 | 557.3 | 1.5e-26 | 2.2e-23 | 82.4 |
| pfu_aug1.0_1105.1_58365.t1 | 6 | 2 | Clathrin | 198 | 280 | 0.0 | 557.3 | 1.7e-17 | 2.5e-14 | 53.0 |
| pfu_aug1.0_1105.1_58365.t1 | 6 | 3 | Clathrin | 289 | 429 | 0.0 | 557.3 | 1.9e-37 | 2.8e-34 | 117.7 |
| pfu_aug1.0_1105.1_58365.t1 | 2 | 1 | Coatomer_WDAD | 399 | 478 | 4.8e-08 | 32.2 | 1.2e-08 | 1.8e-05 | 23.7 |
| pfu_aug1.0_1105.1_58365.t1 | 3 | 1 | TPR_14 | 415 | 444 | 9.1e-07 | 28.9 | 0.00071 | 1.1 | 10.1 |
| pfu_aug1.0_1105.1_58365.t1 | 6 | 4 | Clathrin | 439 | 577 | 0.0 | 557.3 | 9.8e-34 | 1.5e-30 | 105.7 |
| pfu_aug1.0_1105.1_58365.t1 | 3 | 2 | TPR_14 | 534 | 557 | 9.1e-07 | 28.9 | 0.014 | 21.0 | 6.1 |
| pfu_aug1.0_1105.1_58365.t1 | 2 | 2 | Coatomer_WDAD | 543 | 582 | 4.8e-08 | 32.2 | 0.0028 | 4.2 | 6.0 |
| pfu_aug1.0_1105.1_58365.t1 | 6 | 5 | Clathrin | 585 | 727 | 0.0 | 557.3 | 1.2e-34 | 1.8e-31 | 108.6 |
| pfu_aug1.0_1105.1_58365.t1 | 3 | 3 | TPR_14 | 593 | 619 | 9.1e-07 | 28.9 | 0.034 | 50.0 | 4.9 |
| pfu_aug1.0_1105.1_58365.t1 | 6 | 6 | Clathrin | 733 | 874 | 0.0 | 557.3 | 6.0e-36 | 8.9e-33 | 112.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1105.1_58365.t1 | gi|348541243|ref|XP_003458096.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1105.1_58365.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1105.1_58365.t1 tggttagtgacctactttggctcgctgtccgtggacgactccctggaatgtatcaaggccatgttacaggcaaacatccg tcagaatctacaagtctgtgtacaaatagcatcaaaatatcatgaacaactcggaacacaagctcttatagaaatatttg aatcattcaaaagctttgaaggacttttctacttccttggatctatcgtcaacttcagtcaggatggagacgttcacttc aagtacattcaggcggcctgcaaaactggacaaatcaaagaagtggaaagaatttgtagagaaagtaacgtgtacgatcc tgaacgtgtaaagaacttcctaaaggaagccaaacttacagaccagctgccccttattatagtgtgtgacagatttgact ttgttcatgacctcgtgttatacttatacagaaataatctacagaaatacatagaaatctacattcaaaaggtgaatcca gcccgtttacctgtagttataggtggtctgttagatgtagactgtggtgaagacgtaatcaaacagctgatcatggtggt caaaggccaattctctacagatgaactagtagaagaagtagagaaaagaaacagagagaaccagttttacgacagtcgtg tggtgggtaaatactgcgagaagagagatccacatttagcctgtgtagcttatgaaagaggtcaatgtgacgaagaactt atacaggtttgcaatgagaactcactgtttaagagtgaggctagatacttagtacgtaggagagaccttgacctatgggc gaaggttcttaatgaagaaaatgaatacagacgacagctgatagaccaggttgtacaaacggcattatcagagacccagg accctgaggatatctctgttacagtcaaagccttcatgacggctgatctacctaacgagctgatagaactactggagaag atcgtactggataactcagtgttcagtgagcataggaatctacagaacttgttgattctgacggctatcaaagctgaccg tacacgtgtaatggagtatattaatcgcctggataattacgatgctccggatatagcaaacatcgctatcagtaatgaac tgtttgaagaggcttttgctatcttcaagaaatttgaagtcaacacttcagctatacaggtattgattgagaatgtgaac aacttagacagagcgtacgagtttgccgagcgttgtaatgatccggccgtatggagccagttaggacgtgcacagttaga tcagggaatggttaaggaggccatagattcctttataaaagctgatgatcctacacaatatatggaagttgttaatgtag ctagtaataataacagctgggaagatttagtgaaattccttcaaatggcaagaaagaagacgagggaaacatttatagag acagaattagtgtatgcctatgcaaagaccaacagactggcagatttagaagaatttatatcgggtcctaaccatgctaa cattacacaggtagcagacaggtgttttgatgataagatgtatgatgctgctaagctcctgtacaacaatgtatctaact acgccagactggctatcactctagtccatttaggagagtaccagggagccgtggatggtgctagaaaagctaacagcact aaaacatggaaagaggtgtgctttgcatgtgtaaacaatgaggagttccgtttggcccagatgtgtggtttacatatagt tgtacacgctgatgaattagaagatttaatcaactactaccaagataggggatacttcgaggaacttataaccttattag aggcagcattaggtttagaaagggcccatatgggcatgttcacagaattagcaattttatactcaaaattcaagccaaac aaaatgagagaacatttagaattgttctggtcaagagttaacattccaaaggtactacgtgccgctgagcaagcccatct atggcctgagctagttttcctgtatgacaaatacgaggaatatgataacgccattatagctatgatgaaccatccaacag aggcctggaaggaaagtcagtttaaggacatcgtcaccaaagtggctaatatagagctgtactacaaagccattcaattc tacctagacttcaaaccgttacttttgaatgatttactaatggtcctaacaccgcgtctagaccatactcgagctgtgaa cttctttgctaaggtcaaccagattccgctggtcaagccctacctccgtagtgtccagaaaaacaacaacaaagctatta acgaggcattgaacaacttgctgatagaggaggaggactatcagggtctacaagcctccatagacggctacgataacttt gataatatcatgctggcacagcgactcgagaaacacgagttgattgagttcaggaggatagctgcgtatctgtacaaggg caacaatcggtggaagcagtctgttgacctctgtaaaaaagataaactattcaaggatgcaatgtgttacgctggtgaat cccgtaatgttgatatagcggaggatttgatagcttggttcctggaggagaagtaccatgaatgttttgcagcgtgtctg ttccaatgctatgatttactacgaccagacgtaatcctagagctagcatggagacataacattatggactttgccatgcc gtatatgatacaggttgtgagggagtacatcagcaaggttgataagttagaacaagcagagaatgtaaggagcgaagagg agcagaaagctgaggaacgacccatcgtatttgctgagccccagctgatgttgactgctggaccagccactatgatggcc cctcctcaggccccctccccccaacctccatatggtggggcatacccaggtggaatgggaggcggggtccctccctatgg atacagcatgtaa |
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Protein
| Protein ID | pfu_aug1.0_1105.1_58365.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1105.1_58365.t1 WLVTYFGSLSVDDSLECIKAMLQANIRQNLQVCVQIASKYHEQLGTQALIEIFESFKSFEGLFYFLGSIVNFSQDGDVHF KYIQAACKTGQIKEVERICRESNVYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYIQKVNP ARLPVVIGGLLDVDCGEDVIKQLIMVVKGQFSTDELVEEVEKRNRENQFYDSRVVGKYCEKRDPHLACVAYERGQCDEEL IQVCNENSLFKSEARYLVRRRDLDLWAKVLNEENEYRRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEK IVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFEVNTSAIQVLIENVN NLDRAYEFAERCNDPAVWSQLGRAQLDQGMVKEAIDSFIKADDPTQYMEVVNVASNNNSWEDLVKFLQMARKKTRETFIE TELVYAYAKTNRLADLEEFISGPNHANITQVADRCFDDKMYDAAKLLYNNVSNYARLAITLVHLGEYQGAVDGARKANST KTWKEVCFACVNNEEFRLAQMCGLHIVVHADELEDLINYYQDRGYFEELITLLEAALGLERAHMGMFTELAILYSKFKPN KMREHLELFWSRVNIPKVLRAAEQAHLWPELVFLYDKYEEYDNAIIAMMNHPTEAWKESQFKDIVTKVANIELYYKAIQF YLDFKPLLLNDLLMVLTPRLDHTRAVNFFAKVNQIPLVKPYLRSVQKNNNKAINEALNNLLIEEEDYQGLQASIDGYDNF DNIMLAQRLEKHELIEFRRIAAYLYKGNNRWKQSVDLCKKDKLFKDAMCYAGESRNVDIAEDLIAWFLEEKYHECFAACL FQCYDLLRPDVILELAWRHNIMDFAMPYMIQVVREYISKVDKLEQAENVRSEEEQKAEERPIVFAEPQLMLTAGPATMMA PPQAPSPQPPYGGAYPGGMGGGVPPYGYSM |
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