Gene
| Gene Model ID | pfu_aug1.0_1105.1_58366 |
|---|---|
| Locus | scaffold1105.1 : 20496 ... 45529 : + |
| To GenomeBrowser | scaffold1105.1:20496..45529 |
| Genes list of scaffold | scaffold1105.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1105.1_58366.t1 | 2 | 1 | TSP_1 | 12 | 60 | 6.0e-10 | 39.0 | 4.1e-14 | 6.0e-10 | 39.0 |
| pfu_aug1.0_1105.1_58366.t1 | 2 | 2 | TSP_1 | 130 | 135 | 6.0e-10 | 39.0 | 0.28 | 4100.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1105.1_58366.t1 | gi|328698394|ref|XP_003240630.1| | PREDICTED: somatomedin-B and thrombospondin type-1 domain-containing protein [Acyrthosiphon pisum] | 2.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1105.1_58366.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1105.1_58366.t1 atgtgcaaacgggcaggtaaagattgtgtagtgtcagaatggggaccctggtcacaatgtaacgcattgtgcgggttagg tagtcaaaagcggaaacggaagccgatcagaaagagacaacatggtggccaagactgtccggttctccaagaaaagcgcg catgcgtaggagatcggtgctacgaaatacaaagtgtagaatatcagggcagggaacttagagaggttggtcaaatcatt cctcagcggttttcatcatggaggaacagtcccgagtacagtcctaaactagacatccggtctaaccttcaggatcccag caacgaagtaccaactagactagcatactgcgcaacgttcaagatcacagagactcgcaccagatgtaacacgaccgtgt ctgagcgtcagtgggctaacgtcatgcagccgggtactgaggtgtgtgtccagtgtgacccattcgccatgagtaaagac ctcggaacacgatgtataggacacggtgtccacaaccatgaaacaaaatggaaagcggtccacgtgccatactgcaacgg gaagtggatgatgatttctaaacacaaagagtgcacatgtcatctaaatccgggattcgatttcatcctcgtgtga |
|
Protein
| Protein ID | pfu_aug1.0_1105.1_58366.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1105.1_58366.t1 MCKRAGKDCVVSEWGPWSQCNALCGLGSQKRKRKPIRKRQHGGQDCPVLQEKRACVGDRCYEIQSVEYQGRELREVGQII PQRFSSWRNSPEYSPKLDIRSNLQDPSNEVPTRLAYCATFKITETRTRCNTTVSERQWANVMQPGTEVCVQCDPFAMSKD LGTRCIGHGVHNHETKWKAVHVPYCNGKWMMISKHKECTCHLNPGFDFILV |
|