Gene
| Gene Model ID | pfu_aug1.0_111.1_36303 |
|---|---|
| Locus | scaffold111.1 : 40093 ... 52335 : - |
| To GenomeBrowser | scaffold111.1:40093..52335 |
| Genes list of scaffold | scaffold111.1 |
| Synonym | pfu_aug2.0_498.1_27479 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_111.1_36303.t1 | 1 | 1 | CAF1 | 12 | 419 | 0.0 | 208.3 | 0.0 | 0.0 | 207.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_111.1_36303.t1 | gi|260818115|ref|XP_002603930.1| | hypothetical protein BRAFLDRAFT_146106 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_111.1_36303.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_111.1_36303.t1 atgacaactagatttgagaaagtacctgttgttgatatcaccaaaaacaactttcagcttttatggccctctatctgcaa agccatctcaacatcaacatttgttgccatggatacggaattaagtggtataggaacaagaaagctgctgatggcgaagt caatagaggatagatataatgggatgtcagatattgccaagaccagatctatagtctcctttggaatctcatgcttcaag ttggaaaatgcacggttatctgaccagggatcaaatagtgagtgtaagacacatcaaggagtcacaaaatgggagtatgc agtggagacgtttaacctcacagctttatgtagcgaggaatatgtagtggaaccaaactccctcaagttcttgttgaatc atggatttgatttcaacagacagtactcctctggtatcccgtaccatagaggaaatgatcggattccaagtaatgaagag gaaagcctaacgctgcggcacttgtttacagagatagtttgtgctagtaaacctgtggtgtttcacaatggcttaatgga ccttatatacctgtaccagaacttttatgcaaacctccctactcaaattagcacatttttatctgatctgacagaagtct tctcgtgtggtatatttgacacaaagtacattgcagactatgttcagatgttaccagcttcatacttggagtatgtgttc agcagaagtcagagagagaattgtgtgaagaagaataaaggacagtcctatgtaagtgtctcatttccacattatgaaga aacagctaacattattgactgctgctgccctctacccgatgaaatagatgccgatctgaccttgccaagggaggcaattg actcaatgagacaagctgtctgtgaatcatttgctggacatggatggtgtgaactaggaattaactgtacactttcacat gacatggatttaattttggaccttgataaactgggtcaaacaaaagaagtcaggaagagaaagagacgaaataaaaacaa acaacaaagcttaaacagcataaaaaacggaacgcagcagattgatggagagcagataattacagaaaatatggagactg attttgtgtcagaaagtactgttgttgttgagaaaactgttaatttaccttcgaaatatttgaaatccgagtgtgacgta catagcgcaggatgtcatagatctgggtatgatgcctttatgacaggattcactttagccgtgtgtctttcacaatacgg aaactatagcggaagttatgacatgagcaaccttggtatcgagcaattcaagaataatatttctctcagtggcaaggata tgccacttactgttagtaaaagcagcttctctaaaacctcaaaagaacacagggacaaaatggaaaggatcagacaaaag aacaacatctag |
|
Protein
| Protein ID | pfu_aug1.0_111.1_36303.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_111.1_36303.t1 MTTRFEKVPVVDITKNNFQLLWPSICKAISTSTFVAMDTELSGIGTRKLLMAKSIEDRYNGMSDIAKTRSIVSFGISCFK LENARLSDQGSNSECKTHQGVTKWEYAVETFNLTALCSEEYVVEPNSLKFLLNHGFDFNRQYSSGIPYHRGNDRIPSNEE ESLTLRHLFTEIVCASKPVVFHNGLMDLIYLYQNFYANLPTQISTFLSDLTEVFSCGIFDTKYIADYVQMLPASYLEYVF SRSQRENCVKKNKGQSYVSVSFPHYEETANIIDCCCPLPDEIDADLTLPREAIDSMRQAVCESFAGHGWCELGINCTLSH DMDLILDLDKLGQTKEVRKRKRRNKNKQQSLNSIKNGTQQIDGEQIITENMETDFVSESTVVVEKTVNLPSKYLKSECDV HSAGCHRSGYDAFMTGFTLAVCLSQYGNYSGSYDMSNLGIEQFKNNISLSGKDMPLTVSKSSFSKTSKEHRDKMERIRQK NNI |
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