Gene
| Gene Model ID | pfu_aug1.0_111.1_36304 |
|---|---|
| Locus | scaffold111.1 : 54126 ... 86479 : + |
| To GenomeBrowser | scaffold111.1:54126..86479 |
| Genes list of scaffold | scaffold111.1 |
| Synonym | pfu_aug2.0_498.1_27477 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_111.1_36304.t1 | 1 | 1 | Brix | 111 | 282 | 0.0 | 160.1 | 0.0 | 0.0 | 159.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_111.1_36304.t1 | gi|291236446|ref|XP_002738150.1| | PREDICTED: ribosome production factor 1-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 2 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 2 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_111.1_36304.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_111.1_36304.t1 atggagggacctgaggaaattgagaatgcggcattgtcgataccgaagcgaaatatttcaagtattaaaaataagatact cagaaatgaagcatatcgaaagcttaaaatggaaaaacgaaaggcccaaatgcaggaacggaaaaagagaaaacaggaag cagaagaaatgggggaaaaggccccgccaaagaaagtcccaaaaacaatagagaacatgagggtgtttgatgaaacaatg gtgaatccacaggacactgaggtaatgattgatgaagctcaggatgagatgtccagttacttcaacagagaaactcttcc caaaattcttataacaacatgtgatagaccttgcagtagaaccaacaaattttgtaaagaactaaggaatagtattccaa actcagagatttattacagaagaggacttgacctgaagaaaatcataccacaggcattatccagagattttacagatctc attgtaataaacgaagacaggaaggaacctaatggtctagtcatgtcacatctaccagacggtcctacagctcatttcaa actcagcagtctcaggttatcaacagaaataaggagggcaggtgacatgagtcagcacagaccagaagtcattctcaaca attttaacacacgacttggtcattctgtgggtagaatgttggcctctcttttccaccatgatccccagtttagtggacgc cgagttgttacatttcacaatcagagagacttcatattcttcagacatcatagatatgtattccgaaactccaagaaagt tgggctgaaggagcttggaccaagatttacactcaaactaaggtctttacagaaaggaacatttgattccaaatttggag aatatgaatgggtgcacaagcgacatgaaatggagaccagcagaaggaaattcttcttgtag |
|
Protein
| Protein ID | pfu_aug1.0_111.1_36304.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_111.1_36304.t1 MEGPEEIENAALSIPKRNISSIKNKILRNEAYRKLKMEKRKAQMQERKKRKQEAEEMGEKAPPKKVPKTIENMRVFDETM VNPQDTEVMIDEAQDEMSSYFNRETLPKILITTCDRPCSRTNKFCKELRNSIPNSEIYYRRGLDLKKIIPQALSRDFTDL IVINEDRKEPNGLVMSHLPDGPTAHFKLSSLRLSTEIRRAGDMSQHRPEVILNNFNTRLGHSVGRMLASLFHHDPQFSGR RVVTFHNQRDFIFFRHHRYVFRNSKKVGLKELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMETSRRKFFL |
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