Gene
| Gene Model ID | pfu_aug1.0_11185.1_10282 |
|---|---|
| Locus | scaffold11185.1 : 17223 ... 22711 : - |
| To GenomeBrowser | scaffold11185.1:17223..22711 |
| Genes list of scaffold | scaffold11185.1 |
| Synonym | pfu_aug2.0_266.1_20514 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11185.1_10282.t1 | 1 | 1 | Methyltransf_31 | 4 | 105 | 1.0e-05 | 25.1 | 7.5e-09 | 1.2e-05 | 24.9 |
| pfu_aug1.0_11185.1_10282.t1 | 1 | 1 | Methyltransf_26 | 7 | 93 | 4.7e-06 | 26.6 | 4.1e-09 | 6.7e-06 | 26.1 |
| pfu_aug1.0_11185.1_10282.t1 | 1 | 1 | Methyltransf_18 | 7 | 91 | 6.0e-06 | 26.8 | 6.4e-09 | 1.1e-05 | 26.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11185.1_10282.t1 | gi|348572318|ref|XP_003471940.1| | PREDICTED: uncharacterized protein LOC100727960 [Cavia porcellus] | 6.0e-30 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_11185.1_10282.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11185.1_10282.t1 ggctacctatacagtagagctcagaccattataggagtagagatggacccaagtttctgtcagctacaacaaaaaattgt gtctgacttcaaattccaggacagaattcagattatccaaaatgatgttctcaattgtggagatatcctttcttctgctg acgtggtgatactgaacaatgtttttgaatttttcctgagtcctgatcaacagaggaggacatgggagtttttgtcatcc aagctgagaaaatctgggtcagtgttagtcacagtaccagctgtggaggaatcattacaaactatacaaagtaacattga cgcgacaagttggctgaggccagttaacacgacatcctcactggacagagccaacatgatactatatggtaccacagact ctgagggatcagatttaaacgaaatattctgttatgaagtcatatag |
|
Protein
| Protein ID | pfu_aug1.0_11185.1_10282.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11185.1_10282.t1 GYLYSRAQTIIGVEMDPSFCQLQQKIVSDFKFQDRIQIIQNDVLNCGDILSSADVVILNNVFEFFLSPDQQRRTWEFLSS KLRKSGSVLVTVPAVEESLQTIQSNIDATSWLRPVNTTSSLDRANMILYGTTDSEGSDLNEIFCYEVI |
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