Gene
| Gene Model ID | pfu_aug1.0_11227.1_17742 |
|---|---|
| Locus | scaffold11227.1 : 30644 ... 33025 : - |
| To GenomeBrowser | scaffold11227.1:30644..33025 |
| Genes list of scaffold | scaffold11227.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11227.1_17742.t1 | 1 | 1 | zf-RING_2 | 23 | 69 | 3.4e-10 | 39.5 | 2.9e-13 | 3.4e-10 | 39.5 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 1 | zf-C3HC4_3 | 23 | 73 | 3.6e-08 | 32.9 | 3.2e-11 | 3.6e-08 | 32.9 |
| pfu_aug1.0_11227.1_17742.t1 | 2 | 1 | zf-RING_UBOX | 24 | 66 | 3.5e-09 | 36.2 | 3.0e-12 | 3.5e-09 | 36.2 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 1 | zf-C3HC4_2 | 24 | 68 | 8.8e-09 | 35.2 | 7.7e-12 | 8.8e-09 | 35.2 |
| pfu_aug1.0_11227.1_17742.t1 | 1 | 1 | zf-C3HC4_4 | 24 | 68 | 6.2e-08 | 32.3 | 5.4e-11 | 6.2e-08 | 32.3 |
| pfu_aug1.0_11227.1_17742.t1 | 2 | 1 | zf-C3HC4 | 24 | 68 | 1.1e-07 | 31.4 | 9.3e-11 | 1.1e-07 | 31.4 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 1 | zf-RING_5 | 24 | 70 | 2.7e-06 | 26.9 | 2.4e-09 | 2.7e-06 | 26.9 |
| pfu_aug1.0_11227.1_17742.t1 | 2 | 2 | zf-RING_UBOX | 65 | 71 | 3.5e-09 | 36.2 | 0.25 | 290.0 | 1.2 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 2 | zf-C3HC4_3 | 111 | 142 | 3.6e-08 | 32.9 | 0.04 | 46.0 | 3.7 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 1 | zf-B_box | 111 | 159 | 9.4e-06 | 25.4 | 1.5e-06 | 0.0017 | 18.1 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 2 | zf-RING_5 | 113 | 146 | 2.7e-06 | 26.9 | 0.065 | 75.0 | 3.1 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 2 | zf-C3HC4_2 | 128 | 141 | 8.8e-09 | 35.2 | 0.38 | 430.0 | 1.0 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 2 | zf-B_box | 171 | 205 | 9.4e-06 | 25.4 | 1.1e-07 | 0.00013 | 21.7 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 3 | zf-B_box | 563 | 580 | 9.4e-06 | 25.4 | 0.99 | 1100.0 | -0.5 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 3 | zf-RING_5 | 565 | 580 | 2.7e-06 | 26.9 | 0.0016 | 1.8 | 8.3 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 3 | zf-C3HC4_3 | 568 | 579 | 3.6e-08 | 32.9 | 0.17 | 190.0 | 1.8 |
| pfu_aug1.0_11227.1_17742.t1 | 3 | 3 | zf-C3HC4_2 | 569 | 580 | 8.8e-09 | 35.2 | 0.047 | 54.0 | 3.9 |
| pfu_aug1.0_11227.1_17742.t1 | 2 | 2 | zf-C3HC4 | 572 | 580 | 1.1e-07 | 31.4 | 0.16 | 180.0 | 1.8 |
Transcript
| Transcript ID | pfu_aug1.0_11227.1_17742.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11227.1_17742.t1 atggcgacagcaacgccctctcaagatgatagtgaagaaaaatcttctacaaagagtactcggtatgtctgtcctatttg tctagaatctatgaagactcctcgttctcttccttgtcaacataccttttgtgaagattgtttacaaacttttattactg ctgctaccggtaaaaatctagatggcatcgcatgtccagtatgtagaaaacaaattatggcaccagaacctggattacca agggataaatgggcaaaagcttttccattgaactactacttatctacatatttggttcagcaagatgcatctgatttaaa aagcgagatagaaaattgcaaagcttgtaagagatcaaacaatttactaacaccagctgatcactactgcaaaaattgtg gtgaaacaatttgtgatgcttgtaaacaattgcacaagaattttcagattacgaataatcatgtgattgtaacattagaa catttcagaaacaatccatccataccggagaaagatgaaatttgtccataccatccgagtaaagttatagaagtttactg cttggaccacagtaaaatgtgctgcagtgtgtgcttcgctacaaatcatcgtcattgtaaggatgtgaaatccattgaag aatgtgctgaagatttgccaaaagatgttctcaaactcatatctacaaaattggagtctttgttggaatcggttgaagag gaaattaaagaaaaggaaaagatgagtgaaaaacgaaagaaatgtagagatgagattgtagtaaatatgacacaatgcgt agaagctgctaagaaaaaccttgacattctactccaacagtttgaatctgacattgataagaaagagtcttctgctgaat cacagttacaaaacatcctgaaaatcttgcaagggataaaaacatcagttataggagataggcagatgttagagacagct aacaagtttggttctaagacacaagtctttgttgctctggaaaaggtgaaaatacaaatgaatgaacagttaaaacaaat atcagatgttgcaaatggatcccttccagatgggtacactattggtatgaagaaagttgaagaagtttgcaaatggaaaa gcataggttctgttgataccgtagcatcatccggcccagcagttacgaaagggacacttgtcttgatgggttctttcaag aaggattcagattatctaagaagacaattacatttcattcatttggaacctcacatgatgaagtgggttgaaaaatggac atgtaaacaaccaactggatgttacggggccacagtatttggaacggaaatagcagtagtgacaaggaacatcaaaatag ttatgtttaacagagatggtggagtactatgtgagcatactattccatatgataaagaacctgcagatattaataacaca ggggatgaaaacaaatttttcgtttcttttaagaaaggaaagatattgaaggaatatcgcgttgacaaggaaaagattac agagctaggtcaaatttcacttcaagctgttgctgagggattttgtatctttgatgatcagattgtccatgcatcagaca actgtatttatatatctagtaggaatggagagttgaaaaaatttatacctgcttcgcctcagggagctatagcattcctt aatggacacccaaaccaacgaatgttttattacacagattgtactcatctttgctgtagaagattggatgaggatactat cacaaaaataccattgtcagagcacacgaaatcgcctagaggtcttggtattgactttcagggcaatgtgtatgtctgct gttatgttttatctgaaaaactgttacaaatctctcacaaagataacagtgttagagttgcattagatgtgagttgttac accatcgcttttcatccagatggcatgtcatttgttctgatagatcatagtgggaacttgaggttttacactttatctga gtaa |
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Protein
| Protein ID | pfu_aug1.0_11227.1_17742.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11227.1_17742.t1 MATATPSQDDSEEKSSTKSTRYVCPICLESMKTPRSLPCQHTFCEDCLQTFITAATGKNLDGIACPVCRKQIMAPEPGLP RDKWAKAFPLNYYLSTYLVQQDASDLKSEIENCKACKRSNNLLTPADHYCKNCGETICDACKQLHKNFQITNNHVIVTLE HFRNNPSIPEKDEICPYHPSKVIEVYCLDHSKMCCSVCFATNHRHCKDVKSIEECAEDLPKDVLKLISTKLESLLESVEE EIKEKEKMSEKRKKCRDEIVVNMTQCVEAAKKNLDILLQQFESDIDKKESSAESQLQNILKILQGIKTSVIGDRQMLETA NKFGSKTQVFVALEKVKIQMNEQLKQISDVANGSLPDGYTIGMKKVEEVCKWKSIGSVDTVASSGPAVTKGTLVLMGSFK KDSDYLRRQLHFIHLEPHMMKWVEKWTCKQPTGCYGATVFGTEIAVVTRNIKIVMFNRDGGVLCEHTIPYDKEPADINNT GDENKFFVSFKKGKILKEYRVDKEKITELGQISLQAVAEGFCIFDDQIVHASDNCIYISSRNGELKKFIPASPQGAIAFL NGHPNQRMFYYTDCTHLCCRRLDEDTITKIPLSEHTKSPRGLGIDFQGNVYVCCYVLSEKLLQISHKDNSVRVALDVSCY TIAFHPDGMSFVLIDHSGNLRFYTLSE |
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