Gene
| Gene Model ID | pfu_aug1.0_11283.1_68301 |
|---|---|
| Locus | scaffold11283.1 : 13466 ... 16151 : + |
| To GenomeBrowser | scaffold11283.1:13466..16151 |
| Genes list of scaffold | scaffold11283.1 |
| Synonym | pfu_aug2.0_3770.1_02489 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11283.1_68301.t1 | 2 | 1 | AIG1 | 43 | 241 | 0.0 | 198.5 | 0.0 | 0.0 | 198.5 |
| pfu_aug1.0_11283.1_68301.t1 | 2 | 1 | MMR_HSR1 | 43 | 136 | 6.8e-07 | 29.2 | 7.0e-10 | 1.5e-06 | 28.1 |
| pfu_aug1.0_11283.1_68301.t1 | 2 | 2 | MMR_HSR1 | 312 | 312 | 6.8e-07 | 29.2 | 0.58 | 1200.0 | -0.6 |
| pfu_aug1.0_11283.1_68301.t1 | 2 | 2 | AIG1 | 330 | 358 | 0.0 | 198.5 | 0.6 | 1300.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11283.1_68301.t1 | gi|114051471|ref|NP_001039525.1| | GTPase IMAP family member 4 [Bos taurus] | 2.8026e-45 |
Transcript
| Transcript ID | pfu_aug1.0_11283.1_68301.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11283.1_68301.t1 atgaatggcatgcatagattggattatatttttgtttcatgcaatacaaatcgtttacttcatcattcgttcttcttttc ggcagttattcaaaaaagatcattgacggcggtgagtaacgaagtcaggattgtgctgattggaaaaacgggccatggaa aaagtgcacttggaaactccattcttggaaaagatatttttcagtcggtaccatctgccgtgtctgtaacaaaggaagtt agctttggacgcgcaactcgatttggcagaaacctacttgtcgttgatacacctgggcttttcgatacaaatgtaactaa tgacgagacccttaacgagataggaaagtgcgttggtatatctgctccaggaatccatgctgctattcttgtgacatcaa taggccgtgtcaccccagaagatcaaaaatcgttcgatatcttcgtgagatattttggtgaagatgtctgtaaatttaca atccttgtcttcaacaggtcaaaagacttgaaaggaatagagttcaaaaactacttagataacgcacatgaatctttcca gaaactgcgacaaaaaattgatgatcgaatcttccttattgacaataatgagaaaaggaaaaagaaggaaaagaaaattc cagaacttttaaaaatgatcgactcgatggttacatcaaataatggagagtactacacaaatgaaatgtaccgtaaagcc gaactgttgataaaagaagaggagttgcgtagaagaaatgaaaccgaaaaacgaaaagagaaagagagaagaaaagttgc ggagccattcctgaaaaagctaaaagagcgcgatgccctagttgaaaaattggaaagaagtcactctctcgctacgatga aggcggatgacttgtcaaaacaacttcatgaagagaaaagaaagcttgaaactctacaacacgagaaacacattcatgaa cttaagttagaaaatcttcaagagaaaataaattccatgacactcagggaaacagaaaggagtaagcaaatagaggacat gaaaacagtatttgattctttgcttcacaaaaaggacaaagacagcgaagtcaagaaaaaagtagaagaatctttactat ttcaacgtgaaattgttctcgatattgaagaagagctacacaaacgctacgaagagaggaatcgtattcgggaagatgtg aaaagtgaagtctacaaggaagaattggaaaggaggaaaaacaaatgtagcatatcctag |
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Protein
| Protein ID | pfu_aug1.0_11283.1_68301.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11283.1_68301.t1 MNGMHRLDYIFVSCNTNRLLHHSFFFSAVIQKRSLTAVSNEVRIVLIGKTGHGKSALGNSILGKDIFQSVPSAVSVTKEV SFGRATRFGRNLLVVDTPGLFDTNVTNDETLNEIGKCVGISAPGIHAAILVTSIGRVTPEDQKSFDIFVRYFGEDVCKFT ILVFNRSKDLKGIEFKNYLDNAHESFQKLRQKIDDRIFLIDNNEKRKKKEKKIPELLKMIDSMVTSNNGEYYTNEMYRKA ELLIKEEELRRRNETEKRKEKERRKVAEPFLKKLKERDALVEKLERSHSLATMKADDLSKQLHEEKRKLETLQHEKHIHE LKLENLQEKINSMTLRETERSKQIEDMKTVFDSLLHKKDKDSEVKKKVEESLLFQREIVLDIEEELHKRYEERNRIREDV KSEVYKEELERRKNKCSIS |
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