Gene
| Gene Model ID | pfu_aug1.0_11285.1_24865 |
|---|---|
| Locus | scaffold11285.1 : 1 ... 12095 : - |
| To GenomeBrowser | scaffold11285.1:1..12095 |
| Genes list of scaffold | scaffold11285.1 |
| Synonym | pfu_aug2.0_594.1_14348 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11285.1_24865.t1 | 2 | 1 | Ank_5 | 177 | 202 | 9.7e-07 | 28.8 | 0.038 | 93.0 | 3.4 |
| pfu_aug1.0_11285.1_24865.t1 | 2 | 1 | Ank_2 | 182 | 243 | 6.1e-09 | 36.0 | 0.012 | 30.0 | 5.0 |
| pfu_aug1.0_11285.1_24865.t1 | 2 | 1 | Ank | 185 | 202 | 1.7e-08 | 33.8 | 0.28 | 700.0 | 0.3 |
| pfu_aug1.0_11285.1_24865.t1 | 2 | 2 | Ank_2 | 381 | 415 | 6.1e-09 | 36.0 | 7.0e-10 | 1.7e-06 | 28.2 |
| pfu_aug1.0_11285.1_24865.t1 | 2 | 2 | Ank_5 | 381 | 414 | 9.7e-07 | 28.8 | 4.6e-08 | 0.00011 | 22.2 |
| pfu_aug1.0_11285.1_24865.t1 | 2 | 2 | Ank | 382 | 412 | 1.7e-08 | 33.8 | 9.3e-11 | 2.3e-07 | 30.2 |
| pfu_aug1.0_11285.1_24865.t1 | 1 | 1 | Ank_3 | 382 | 408 | 4.2e-06 | 26.4 | 1.6e-08 | 4.0e-05 | 23.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11285.1_24865.t1 | gi|260811964|ref|XP_002600691.1| | hypothetical protein BRAFLDRAFT_118554 [Branchiostoma floridae] | 3.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11285.1_24865.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11285.1_24865.t1 atggagacaagatcaagaacctctgccgtagatggtctacagtcaccaaataagaaaatgcagaaacgacagtcgaagaa atattccacagtgttattgtacgaaactggaaatgccctggccaagcttaatggactgaccatagctgcatgtaatccta catcagatcagagccacttaaaatcaacaaaacagcaagacatagatgagcctgctggtatcacaactgatgttataacc catgttcctgacaggaagagctgtaatacatgtggtgttgaatttgaacacaggagtgaacaggatatccagaaccttat aacaagttggagtgagcatatggccaattgtgacttgattttcctccgagcccctagctttaacaagaaaatattcttct ctggaaagacccctctgttgaggaaagatgatgaaagaatccgaatgataccttttcctaccaaacgtccgacacataat gaagttaggagggtacatcaaatgttggcatcaatagaatgttatgctgaggaaaagtatcacttgaagaatgccctgta cacagctgtcaaagttggtgacatagaaactctgcaaaatctagtggccatatttactgtcaatcaagtgacagaggcca cacccacaaatgaatccttctccatatttggaggtgatgagagaatgaggccaagcataaatatagcaatagcaaataac aatgtggaaagtctggaaacgcccactcctacacaggaagtaaatgtgattgatgggtcatcagccaatgaaattgcttc ctttgcagatatagaaacacccactgaagattcaaatgttttgtctttacgaagtcagtctcactctagtcaacaactga atgacctcaatgaaagacagattaatctagtttctaatgttagtgaaaatgaaagtaataattctgaaaataaagtgcat aaacaaaataatttgcaaactccctgtgaaataaatgcaaatagttcaacaactcaaaatatagatgagaaaaggttacc cttgaatgatttagaaaagacagaaacaaacaatgtatccatggaagtgacatcaccggtggttaccatggagattttaa atgagccaataggagataatgagaagacattattacatgtagcttgtaaagaaggacatcggaagatagtgaaaattcta cttgaaagtggagctgacccagccataaaggataaatttggctctccaccatatgtttctaccaatgataaagaagtcag aaacgagttccgacgatttatggcgaggtttccagacaggtatgactacaaaactgcccaggtaccgagtcctctgacac cagagatggagctagagagaaaacaaaaagacgcagacagaaaaaaggctcagaaaaaggcaaaacaagaaagggataag ataaagagagctgaggaggcagtcaaagaagcagaggaaagagagaagaaaagattcttggctctgtcagatagagaaaa gagggcgctggctgcagaaaaacgattattacgagaaaaggaggagaaaggagaagccaaacctgtgacaaggcctgggg caacttccacccatggcgagtacgtggacaaagttgcagtgcaagatattcgacttatgatccggatttttgacgcccgc ctgtccatctggcatcaaattcatatccaagttttgaaactctgctga |
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Protein
| Protein ID | pfu_aug1.0_11285.1_24865.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11285.1_24865.t1 METRSRTSAVDGLQSPNKKMQKRQSKKYSTVLLYETGNALAKLNGLTIAACNPTSDQSHLKSTKQQDIDEPAGITTDVIT HVPDRKSCNTCGVEFEHRSEQDIQNLITSWSEHMANCDLIFLRAPSFNKKIFFSGKTPLLRKDDERIRMIPFPTKRPTHN EVRRVHQMLASIECYAEEKYHLKNALYTAVKVGDIETLQNLVAIFTVNQVTEATPTNESFSIFGGDERMRPSINIAIANN NVESLETPTPTQEVNVIDGSSANEIASFADIETPTEDSNVLSLRSQSHSSQQLNDLNERQINLVSNVSENESNNSENKVH KQNNLQTPCEINANSSTTQNIDEKRLPLNDLEKTETNNVSMEVTSPVVTMEILNEPIGDNEKTLLHVACKEGHRKIVKIL LESGADPAIKDKFGSPPYVSTNDKEVRNEFRRFMARFPDRYDYKTAQVPSPLTPEMELERKQKDADRKKAQKKAKQERDK IKRAEEAVKEAEEREKKRFLALSDREKRALAAEKRLLREKEEKGEAKPVTRPGATSTHGEYVDKVAVQDIRLMIRIFDAR LSIWHQIHIQVLKLC |
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