Gene
| Gene Model ID | pfu_aug1.0_11292.1_53683 |
|---|---|
| Locus | scaffold11292.1 : 20006 ... 26469 : + |
| To GenomeBrowser | scaffold11292.1:20006..26469 |
| Genes list of scaffold | scaffold11292.1 |
| Synonym | pfu_aug2.0_213.1_10453 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11292.1_53683.t1 | 1 | 1 | Ras | 2 | 110 | 8.1e-28 | 96.8 | 2.5e-31 | 9.2e-28 | 96.6 |
| pfu_aug1.0_11292.1_53683.t1 | 1 | 1 | Miro | 2 | 65 | 4.9e-08 | 33.4 | 2.7e-11 | 9.9e-08 | 32.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11292.1_53683.t1 | gi|260787384|ref|XP_002588733.1| | hypothetical protein BRAFLDRAFT_238332 [Branchiostoma floridae] | 3.9937e-43 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantleEdge | 1 |
Transcript
| Transcript ID | pfu_aug1.0_11292.1_53683.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11292.1_53683.t1 atgtttgactctgcagggaaggaaatattttcggaccttgtgcaaaaattttgggaacagccgtctgttgtgatggtagt atatgatgtcacaagtgaagtgtcattctcaagctgtgcaaaatggctggaacgagttcgctgtcagaaaccagagacaa aactcccaggtgttgtagttgcaaacaaaacagatcttgatgaacgacgaataatcagccccaaagctggtatggagttt gctgagagcaatggtctgaaatattttgaatgttcagcaaaagagatgcagaatgttgacgctgccttctattacctcgc taatgagttctacaaactttaccaagagaaagtcgagatatttaaaacgatgtcatag |
|
Protein
| Protein ID | pfu_aug1.0_11292.1_53683.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11292.1_53683.t1 MFDSAGKEIFSDLVQKFWEQPSVVMVVYDVTSEVSFSSCAKWLERVRCQKPETKLPGVVVANKTDLDERRIISPKAGMEF AESNGLKYFECSAKEMQNVDAAFYYLANEFYKLYQEKVEIFKTMS |
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