Gene
| Gene Model ID | pfu_aug1.0_11346.1_68322 |
|---|---|
| Locus | scaffold11346.1 : 47626 ... 62657 : + |
| To GenomeBrowser | scaffold11346.1:47626..62657 |
| Genes list of scaffold | scaffold11346.1 |
| Synonym | pfu_aug2.0_960.1_01273 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11346.1_68322.t1 | 6 | 1 | CSD | 117 | 139 | 5.6e-33 | 112.5 | 0.13 | 470.0 | 0.6 |
| pfu_aug1.0_11346.1_68322.t1 | 3 | 1 | S1-like | 150 | 206 | 1.2e-08 | 34.4 | 4.6e-07 | 0.0017 | 18.0 |
| pfu_aug1.0_11346.1_68322.t1 | 6 | 2 | CSD | 154 | 214 | 5.6e-33 | 112.5 | 3.8e-18 | 1.4e-14 | 53.5 |
| pfu_aug1.0_11346.1_68322.t1 | 6 | 3 | CSD | 271 | 300 | 5.6e-33 | 112.5 | 0.0053 | 19.0 | 5.0 |
| pfu_aug1.0_11346.1_68322.t1 | 3 | 2 | S1-like | 313 | 331 | 1.2e-08 | 34.4 | 0.0055 | 20.0 | 4.9 |
| pfu_aug1.0_11346.1_68322.t1 | 6 | 4 | CSD | 316 | 369 | 5.6e-33 | 112.5 | 1.1e-14 | 3.9e-11 | 42.5 |
| pfu_aug1.0_11346.1_68322.t1 | 6 | 5 | CSD | 447 | 470 | 5.6e-33 | 112.5 | 0.0052 | 19.0 | 5.1 |
| pfu_aug1.0_11346.1_68322.t1 | 6 | 6 | CSD | 481 | 501 | 5.6e-33 | 112.5 | 0.0033 | 12.0 | 5.7 |
| pfu_aug1.0_11346.1_68322.t1 | 3 | 3 | S1-like | 482 | 496 | 1.2e-08 | 34.4 | 0.00072 | 2.7 | 7.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11346.1_68322.t1 | gi|260825712|ref|XP_002607810.1| | hypothetical protein BRAFLDRAFT_259732 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_11346.1_68322.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11346.1_68322.t1 atggaatttttgacaactgatttacagtccatcacttcattctcaccgcccaacatcatttgctccacggacgaacaaat cgaagacatgcggaattgcatgacaacactgtccatgtatactatgtacagtgaagatctattcggtcattttatcccgc agttaatggaatttttgacaactgatttacagtccatcacttcattctcaccgcccaacatcatttgctccacggacgaa caaatcgaagacatgcggaattgcatgacaacactgtccatgtatacaatgtacagtgaagaatggttctttatcccgta ttgtcacgaggacatcgtaaacaacagcagagtcaaatgtggagatcaggtcacctttattttagcaacggataaaagaa atcgggagatgagagcaagacagctagaactggtgcaacttcagaaaaataaaaagtttcagggagtcgtgtgttccttg aaggagtcattcggatttatagagcgttcagacgttgtcaaggagatattctttcactacagcgagtataggggagatat tggagacattaatttgggagatgacgtagaatttgatgtacaagtcagaaataacaaagaagtagccgtaaatatctcca agctgcctgaaggcacagtggtgtttgaggacatcagtgttgataagtacagaggaaaactaaagaggaccctgaagagt aacagacgacacagtgatccgtttggaggacttatatcgtatatggcggacaaaaaagtagtggagatagcatacggtga caaagatcaagacggagattatactctgagagtggatgatgttgtagaattcagcatctctactgatcgcagggacaagc tgcagagggcaacagatataaaactgtgtggagaaacgtttgaaaatacagaagaaaggagagtcaaaggaatcatatct gttttgaaagatggatatggctttattgattcagcagacagagaaagtcgattatttttccactttagcgagcttattga caagaagaaagatttaaaagttcaagagaatgtagaatttactgttgtagaggatccctctaccagcgatgggaaacaaa tggcgattagaatactgtatctacctaaaggtagtgtatcactctacactttacttcctgaaaaatacatcggcaccatc gatagggagccatctattagaaacaactccgcaaagaacaaagatgaatctaaaggaaacataatatttgaccatgaagg gaaaatcagtcatatcgcatacagttctaaagatttgagagactcgaaggatccccattttggagataaagtagaatttc agatatgtgaagtcaaacgaaataatagcaaatatgctgtcaatatcaaagtcattttccgtaacgtttctaataagaga agagggtatgtagcagctctccaagacacatatggatttgtagagaattcagatcacaatcnaggctgtctttttccatt tcacatcattgaatggcagcccatcagaaattga |
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Protein
| Protein ID | pfu_aug1.0_11346.1_68322.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11346.1_68322.t1 MEFLTTDLQSITSFSPPNIICSTDEQIEDMRNCMTTLSMYTMYSEDLFGHFIPQLMEFLTTDLQSITSFSPPNIICSTDE QIEDMRNCMTTLSMYTMYSEEWFFIPYCHEDIVNNSRVKCGDQVTFILATDKRNREMRARQLELVQLQKNKKFQGVVCSL KESFGFIERSDVVKEIFFHYSEYRGDIGDINLGDDVEFDVQVRNNKEVAVNISKLPEGTVVFEDISVDKYRGKLKRTLKS NRRHSDPFGGLISYMADKKVVEIAYGDKDQDGDYTLRVDDVVEFSISTDRRDKLQRATDIKLCGETFENTEERRVKGIIS VLKDGYGFIDSADRESRLFFHFSELIDKKKDLKVQENVEFTVVEDPSTSDGKQMAIRILYLPKGSVSLYTLLPEKYIGTI DREPSIRNNSAKNKDESKGNIIFDHEGKISHIAYSSKDLRDSKDPHFGDKVEFQICEVKRNNSKYAVNIKVIFRNVSNKR RGYVAALQDTYGFVENSDHNXGCLFPFHIIEWQPIRN |
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