Gene
| Gene Model ID | pfu_aug1.0_11346.1_68324 |
|---|---|
| Locus | scaffold11346.1 : 84483 ... 95579 : - |
| To GenomeBrowser | scaffold11346.1:84483..95579 |
| Genes list of scaffold | scaffold11346.1 |
| Synonym | pfu_aug2.0_960.1_01271 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11346.1_68324.t1 | 2 | 1 | Peroxin-3 | 2 | 42 | 0.0 | 202.1 | 1.0e-13 | 1.5e-09 | 37.0 |
| pfu_aug1.0_11346.1_68324.t1 | 2 | 2 | Peroxin-3 | 43 | 266 | 0.0 | 202.1 | 0.0 | 0.0 | 165.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11346.1_68324.t1 | gi|260829353|ref|XP_002609626.1| | hypothetical protein BRAFLDRAFT_125038 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11346.1_68324.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11346.1_68324.t1 gcgacaacatcattttgacagtaatcagcggacctgtaatctgacagtattgtctatgctgccaaacttgagagatgctc ttatgacaatatttgatacggagagtatcactgaaaaactcaaaacaagtccaccaagtaaagttgaattatgggaggaa ctgaagataaagagtttttcccgtattgtatgtgtgatatatggctgtagcatcatggctctcctcctccgtgtacagct taacgtgattggtggatatatatttctggacagtgcccagtcacagaatggaaagaggagagagctgtctattcctaaag aagtccaagagagatatctggctgatatcaagtacttcatgggtcaaggattagaggaattatgtgcctttgtacaagga gctgtagaaaaagagttaaaaagtgttcccctgaaggaaaagctgacattaaataacattcaggcgaggcttaacgatgt tcgagagaggatagagacgagtccggagatttctagtctgtcctctcctacgacggtcctctgtccttacatgctgccca aggaagacaactcatctctggaaaatttatcaaatggagaaaaaatttatcagaaactgacacaggagactagagattta atagagagctctgatttccatgatgttttgaagacgtgtttagatcgtggttacagtaaattagtggatagctttggaga acattaccgtcagatagccacgggagataccatacaaagattgattgtaactttcattgtagatgtaaaagctacaaaag taatttatatcttcatcaatagtatgttgaaaatgatgaaaaaacttaccattgttagaatttga |
|
Protein
| Protein ID | pfu_aug1.0_11346.1_68324.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11346.1_68324.t1 RQHHFDSNQRTCNLTVLSMLPNLRDALMTIFDTESITEKLKTSPPSKVELWEELKIKSFSRIVCVIYGCSIMALLLRVQL NVIGGYIFLDSAQSQNGKRRELSIPKEVQERYLADIKYFMGQGLEELCAFVQGAVEKELKSVPLKEKLTLNNIQARLNDV RERIETSPEISSLSSPTTVLCPYMLPKEDNSSLENLSNGEKIYQKLTQETRDLIESSDFHDVLKTCLDRGYSKLVDSFGE HYRQIATGDTIQRLIVTFIVDVKATKVIYIFINSMLKMMKKLTIVRI |
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