Gene
| Gene Model ID | pfu_aug1.0_1138.1_15364 |
|---|---|
| Locus | scaffold1138.1 : 19518 ... 35535 : - |
| To GenomeBrowser | scaffold1138.1:19518..35535 |
| Genes list of scaffold | scaffold1138.1 |
| Synonym | pfu_aug2.0_375.1_17346 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1138.1_15364.t1 | 1 | 1 | La | 40 | 98 | 1.0e-22 | 79.6 | 1.0e-25 | 2.1e-22 | 78.6 |
| pfu_aug1.0_1138.1_15364.t1 | 2 | 1 | RRM_6 | 137 | 191 | 1.9e-15 | 56.5 | 1.2e-10 | 2.6e-07 | 30.5 |
| pfu_aug1.0_1138.1_15364.t1 | 2 | 1 | RRM_1 | 137 | 191 | 6.6e-11 | 41.6 | 3.7e-11 | 7.9e-08 | 31.8 |
| pfu_aug1.0_1138.1_15364.t1 | 2 | 1 | RRM_3 | 209 | 233 | 1.4e-24 | 85.8 | 0.66 | 1400.0 | -0.9 |
| pfu_aug1.0_1138.1_15364.t1 | 2 | 2 | RRM_3 | 252 | 357 | 1.4e-24 | 85.8 | 6.8e-28 | 1.4e-24 | 85.8 |
| pfu_aug1.0_1138.1_15364.t1 | 2 | 2 | RRM_6 | 255 | 324 | 1.9e-15 | 56.5 | 1.8e-08 | 3.7e-05 | 23.6 |
| pfu_aug1.0_1138.1_15364.t1 | 2 | 2 | RRM_1 | 262 | 306 | 6.6e-11 | 41.6 | 0.0012 | 2.5 | 7.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1138.1_15364.t1 | gi|291228703|ref|XP_002734313.1| | PREDICTED: lupus La protein homolog isoform X1 [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1138.1_15364.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1138.1_15364.t1 atgcaagagaaggaaaaagaaaatggaggagtaaacaatgcagtggaaaataatgctgttaaagaagaagttaaagaaga ggtcaaactcggacctcccaatggtcttgaaaagaaaataattaaacaaattgagtactacttcggagacgtgaatctgc ctcgtgatcgtttcctccaggatgcactcaaagaggaagatggctgggtgtcacttgccacaatgaccaagtttaatcgt ctgaagcagctaacaaccaaccacaaaattattgctaccgcattacggaagtcagattctggattgattcaggtcagtaa agacaatatctttatccgacgaaatcccgaacgaccagtccctgaaaatacagaagaaagaagaaatgaaattaatgccc gaactgcatatgtgaaaggattcccagaaaatataacattagataaactcatccagttctttaatgcaatctcacccatc gacacagttttcatgagaagggatcaagagaaaaaattcaagggctcagtgtttgttaccttttgtgaacagagtagctg tgatagtttcctagccggaggagacgtcaaatatgacgatgtcgttttagcacgaaaacctagaaatgaatatttcaaac tgaaagaagaagagaaaaaaattagaaagctagaacaacttagaaggaaaaaagaggaaatgcaaagacgcgaggctgaa gaaagacaaaaagtcatggatacactaactccaggtgccattctccatttaaccggtattacatcagaggaagtgacaat ggacgatttcaaaaattatttcagtgactacgcatctgttaaatgggtggattttaataagggggataaccaggcatggc tacgttttgaggaggcgaacaaggcaagcgaagcacacaaggcagcattagaggctcacgataataaactagaaatcgga ggatgtgtcgtagaaggcagggtgctagaaggtgaagaagaaatagatcattggagaaaactattcaaagaaagagcaga aagactggcagatatcaaaaagaagaagaggcagagtcgagacagaaggggagggccaaggagaaagaagaggagagatg atagagatgataaaaaagatgacgatgatgaagaagacgatgacgacgacgatgatgatgatgacgacaaagaagatggc gatgaaggagatgatgcaggcgatgtgaaggaagaaccagccaaggatgactag |
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Protein
| Protein ID | pfu_aug1.0_1138.1_15364.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1138.1_15364.t1 MQEKEKENGGVNNAVENNAVKEEVKEEVKLGPPNGLEKKIIKQIEYYFGDVNLPRDRFLQDALKEEDGWVSLATMTKFNR LKQLTTNHKIIATALRKSDSGLIQVSKDNIFIRRNPERPVPENTEERRNEINARTAYVKGFPENITLDKLIQFFNAISPI DTVFMRRDQEKKFKGSVFVTFCEQSSCDSFLAGGDVKYDDVVLARKPRNEYFKLKEEEKKIRKLEQLRRKKEEMQRREAE ERQKVMDTLTPGAILHLTGITSEEVTMDDFKNYFSDYASVKWVDFNKGDNQAWLRFEEANKASEAHKAALEAHDNKLEIG GCVVEGRVLEGEEEIDHWRKLFKERAERLADIKKKKRQSRDRRGGPRRKKRRDDRDDKKDDDDEEDDDDDDDDDDDKEDG DEGDDAGDVKEEPAKDD |
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