Gene
| Gene Model ID | pfu_aug1.0_11398.1_68331 |
|---|---|
| Locus | scaffold11398.1 : 6606 ... 15086 : + |
| To GenomeBrowser | scaffold11398.1:6606..15086 |
| Genes list of scaffold | scaffold11398.1 |
| Synonym | pfu_aug2.0_4466.1_22564 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11398.1_68331.t1 | 1 | 1 | RVT_1 | 6 | 66 | 2.0e-09 | 37.1 | 9.5e-13 | 3.5e-09 | 36.3 |
| pfu_aug1.0_11398.1_68331.t1 | 1 | 1 | rve | 259 | 338 | 1.8e-11 | 44.2 | 1.4e-14 | 5.2e-11 | 42.7 |
Transcript
| Transcript ID | pfu_aug1.0_11398.1_68331.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11398.1_68331.t1 atgaatgatactctggaagggcttagagactctttttgtatcccctatctggatgacatattagtttatagcgctagttt caatgatcatattgaacatttgcgtaccgtgttcaaacggctacatgagcgtggactcaaattacgacttagcaaatgtc acctattccaaaaacaagtccgatacctaggacacatgatcactacagaagagcatactgttgaccccgctgataaggaa gctgtggattcgcttagacagaaaaggccaagcacgataggcgaagtgagacaacctatgggatttatcggctattaccg aggatatatatcagagttctcaaggaaggcgaaacctatcaatgatcttttacaggacgattccattccgaagggcaaag ctcaaaaggccaagcgtaaaagtaaaggacgtggtcagaagggatctaataccccgaaaaattggactgaagtacaccaa caagtcttagaggaacttattgattcgcttactatacctcctgtgatggcttaccctaagtatgacaaaccctacataat gcacattgatgcatgtcaaaatggattaggtgcaatcctgtatcaacatcaggactctggtaaacccgcagtcatcgcgt acgggtcaaggacgcttactccggctgagaaaggatattatatgcactccggaaaactagagtttcttgcattaaaattg agtgtcactgaccgtttcagagactatttgtattatgcaccatactttgatgaatacacttaccctgctaggaacaaggc gggaaagacggcagcagagcgaatttttaatgactttattttgcgctttggcatccctcatcgcttgcatcatgatcagg gacgtgaattcgagaattcatttttctttgagcttcagaagctatgtggaattagtcgttcaaagacgacaacaccttat cacccacaaggaaatggccaggtaaaaagatttaaccgaagcctacttcagatgttaaggacactacgggaagatgagag actagattggcggaagcatctcaacaaagtcgtccatgcgtacaattgttcaaagcatgaatcaacaggttactcacctt tcttcctcttctttgaaagacaccctgttctaccagtagatctcattttgccacgaaatatagcacctggtgaggaggct cgaaagccttatacgcagtatgtagcagaatggaaggatcgtatggagactccttacaaatatgcttctcagaacgcgag gaaaaacgctcagaaaggcaaacaacactatgatgcgaaaggatacggtactattatccttgacaatggtgaccatgtgt tagtgcgcaatctccttgaaaagggtggaccaggtaagctaagaccttactgggaacaggacatttacgttgttgtcaat cgaccgatggaagacttacccgtgtatgatgttcagaagttagatggtcgtggtaaagtccgtcgattatatcgaagttt gttactaccatgcaatagcttacctcttgaacaagacactatcaaaccagtcagaccaaagaaaaagcgaaaaagagcta ctgtttcgaaaaatctacctttaccagttgtagaggacagctcctcggattctgatcttaccgtggatatacctgcgtca aaccttaatccagaggcaagtgaattcgtaccatctagtgaatcttctgttcaggaaatttcccctcccgtggtacagga aaatgtgcttaccgtttccgaaagctcatcctcgttccagtcagcacaagatgactctaatgatgacgagtccgaactac ctgttagtagccaggaggaagaggatgaacatcctgcccaaacagtggatagtaaatcagaaacatctacgcaaggaact cgtcctgcatggaggaggcatcctcctaaggtcctcacgtag |
|
Protein
| Protein ID | pfu_aug1.0_11398.1_68331.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11398.1_68331.t1 MNDTLEGLRDSFCIPYLDDILVYSASFNDHIEHLRTVFKRLHERGLKLRLSKCHLFQKQVRYLGHMITTEEHTVDPADKE AVDSLRQKRPSTIGEVRQPMGFIGYYRGYISEFSRKAKPINDLLQDDSIPKGKAQKAKRKSKGRGQKGSNTPKNWTEVHQ QVLEELIDSLTIPPVMAYPKYDKPYIMHIDACQNGLGAILYQHQDSGKPAVIAYGSRTLTPAEKGYYMHSGKLEFLALKL SVTDRFRDYLYYAPYFDEYTYPARNKAGKTAAERIFNDFILRFGIPHRLHHDQGREFENSFFFELQKLCGISRSKTTTPY HPQGNGQVKRFNRSLLQMLRTLREDERLDWRKHLNKVVHAYNCSKHESTGYSPFFLFFERHPVLPVDLILPRNIAPGEEA RKPYTQYVAEWKDRMETPYKYASQNARKNAQKGKQHYDAKGYGTIILDNGDHVLVRNLLEKGGPGKLRPYWEQDIYVVVN RPMEDLPVYDVQKLDGRGKVRRLYRSLLLPCNSLPLEQDTIKPVRPKKKRKRATVSKNLPLPVVEDSSSDSDLTVDIPAS NLNPEASEFVPSSESSVQEISPPVVQENVLTVSESSSSFQSAQDDSNDDESELPVSSQEEEDEHPAQTVDSKSETSTQGT RPAWRRHPPKVLT |
|