Gene
| Gene Model ID | pfu_aug1.0_11428.1_68335 |
|---|---|
| Locus | scaffold11428.1 : 24306 ... 36118 : + |
| To GenomeBrowser | scaffold11428.1:24306..36118 |
| Genes list of scaffold | scaffold11428.1 |
| Synonym | pfu_aug2.0_816.1_21178 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11428.1_68335.t1 | 1 | 1 | SH3_2 | 203 | 258 | 9.0e-11 | 41.0 | 6.5e-14 | 2.4e-10 | 39.7 |
| pfu_aug1.0_11428.1_68335.t1 | 1 | 1 | SH3_1 | 205 | 253 | 6.3e-07 | 28.6 | 3.2e-10 | 1.2e-06 | 27.7 |
| pfu_aug1.0_11428.1_68335.t1 | 1 | 1 | SH3_9 | 206 | 256 | 3.6e-13 | 48.8 | 2.0e-16 | 7.2e-13 | 47.8 |
| pfu_aug1.0_11428.1_68335.t1 | 1 | 1 | MyTH4 | 403 | 514 | 1.2e-25 | 89.6 | 1.1e-28 | 4.1e-25 | 87.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11428.1_68335.t1 | gi|321477436|gb|EFX88395.1| | hypothetical protein DAPPUDRAFT_191611 [Daphnia pulex] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_11428.1_68335.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11428.1_68335.t1 atgatgcagcaactagcagcacaacaactggctgcacagcaacaacaagcttcccagcaacaagctctgtacaatgccta cctgcaacaactggtaaagatttataataattttgacgaagcagaagtgaaagttgagcctccacctttaccaaggagcc ctcctccaaaactacctgttgctacggaaaccctagaaacagttaccatggaatccaaacctaaattccacataaactac actgagctggagagagtggtgactagactgtacccccagggcaaacagaaatacatgacctacaataacgtgccctggac actcaatgtcagaaaagagggtcaaggtcattatgatcatattcgttttactggagtgagccacacagggataaagctgg tggccagggtcagatcactggtcgaggactatttagatgttgtagaacacttcaactttgaagatgtaatagatgttgta atgccaaccaatgacacaatccaaatcaacctcaaaaacaaatccatcgttttctttacaaacagggccaagcagatgaa acagatgatagacatgtatctacatgaaagtgatcggggaaacaagtttgttgtagccatcaaggactacattacccggg aatctacactgctgagcttcagacgaggtgatgtcatcaagattctggatgcagagatgcaactagaagatggatggctg tatggttcattgaacggagttttgggctacttccctgcggagtatgtacgaccattggctcgacatgaagtggagagagg ggggatgaaggatggacaaatcacagacaacaggtcagagactagccagggaactgtggtacctgatggtaaaatgtcca tgatggaattcgctatgttaaactacagggaatcacttcagaagtatgagatgctacgaaccgaagacggctccatacgt ggtacagtcaaaatgatcgaaagtgtaaaactacgtaatttggagcaagagcagcataaactgaaacgtcaagggtcaaa tgaatggtcatggagagagcaagcagatcttatcaaatggactaggtcgcctatccaggcatctctactgaagttaatgt caccagagctgaacaaagtggctttagaatgtttcctgtgtataatgcgctttatggaggattatcccatgggaacaaat caaagcaaagcagactgtgctctcaaaattctcaggtactgtcacaaacatccagagctgagagacgaggtgtactgtca actttgtaaacaaacaacaagcaataggagcatgaaaccgcgaagttgtatactcggctggcgactgtttgccatcgtag catgttactgtgactgctccgacaacctacgaccgtatctgtataaataccttgacaccatgtcctccgaccctgccaaa acgtacagtggagctgccaacatctgcctacaaaatatcaggaaaaccttccgttacggaggaaggaaaaacgtacctct caaagaagaaattaatgctctggcggaaggcagaatatccaagcggttctctttcttctttagtggatcagaaaaggaag gcatgcttcatattaaaccgtgcacggttgtacgagatgctatagaggacatctgcggtaaactcaacattgtagatggt gtagagatggaggaatacaccctcttcctgcgaacaagagatgagcaactaaacatacccagatttgagcgattaaagcc agatgagtacatcttagacgtgacgacagagttggtacggcagaaccagacatacgacttggtgttccagagaaccgtgt ggtttttcccattccgtcatatagacaatgtcctgtataatgagcttatgttcttccagtgtttacctgactatgtagaa gctttacttttagtgttgaaagacggacgtatcagtcatagagaagaggaagacatagcggcactaggcgccttacttta ccgtgcatttgatcgggttggaatgcctactcagtaa |
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Protein
| Protein ID | pfu_aug1.0_11428.1_68335.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11428.1_68335.t1 MMQQLAAQQLAAQQQQASQQQALYNAYLQQLVKIYNNFDEAEVKVEPPPLPRSPPPKLPVATETLETVTMESKPKFHINY TELERVVTRLYPQGKQKYMTYNNVPWTLNVRKEGQGHYDHIRFTGVSHTGIKLVARVRSLVEDYLDVVEHFNFEDVIDVV MPTNDTIQINLKNKSIVFFTNRAKQMKQMIDMYLHESDRGNKFVVAIKDYITRESTLLSFRRGDVIKILDAEMQLEDGWL YGSLNGVLGYFPAEYVRPLARHEVERGGMKDGQITDNRSETSQGTVVPDGKMSMMEFAMLNYRESLQKYEMLRTEDGSIR GTVKMIESVKLRNLEQEQHKLKRQGSNEWSWREQADLIKWTRSPIQASLLKLMSPELNKVALECFLCIMRFMEDYPMGTN QSKADCALKILRYCHKHPELRDEVYCQLCKQTTSNRSMKPRSCILGWRLFAIVACYCDCSDNLRPYLYKYLDTMSSDPAK TYSGAANICLQNIRKTFRYGGRKNVPLKEEINALAEGRISKRFSFFFSGSEKEGMLHIKPCTVVRDAIEDICGKLNIVDG VEMEEYTLFLRTRDEQLNIPRFERLKPDEYILDVTTELVRQNQTYDLVFQRTVWFFPFRHIDNVLYNELMFFQCLPDYVE ALLLVLKDGRISHREEEDIAALGALLYRAFDRVGMPTQ |
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