Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_11447.1_10324
Locus scaffold11447.1 : 10396 ... 13390 : +
To GenomeBrowser scaffold11447.1:10396..13390
Genes list of scaffold scaffold11447.1
Synonym pfu_aug2.0_490.1_00807

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_11447.1_10324.t1 1 1 C1q 4 73 5.4e-06 26.4 3.8e-10 5.7e-06 26.3

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 2
>Adult tissues
mantle 2
mantlePallium 2

Transcript
Transcript IDpfu_aug1.0_11447.1_10324.t1
Definition-
>pfu_aug1.0_11447.1_10324.t1
atgatgagcgctccaaagaatcatatgcaccttggaataatgaagaattcccagaccttaacagtcttgttctcgaacaa
gaatacatacccgcaagcttcaaccaccttgaatgtgttcctaagcaaaggggatacagcatgggtacaacgccattcag
gaagggttcttgaggcacatatgaacggacgcttcaatgtcttctccggagttctgattaccccaatgtag

Protein
Protein IDpfu_aug1.0_11447.1_10324.t1
Definition-
>pfu_aug1.0_11447.1_10324.t1
MMSAPKNHMHLGIMKNSQTLTVLFSNKNTYPQASTTLNVFLSKGDTAWVQRHSGRVLEAHMNGRFNVFSGVLITPM

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