Gene
| Gene Model ID | pfu_aug1.0_11458.1_10325 |
|---|---|
| Locus | scaffold11458.1 : 5956 ... 11531 : + |
| To GenomeBrowser | scaffold11458.1:5956..11531 |
| Genes list of scaffold | scaffold11458.1 |
| Synonym | pfu_aug2.0_181.1_03767 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11458.1_10325.t1 | 2 | 1 | SNARE | 67 | 104 | 4.3e-11 | 42.3 | 1.5e-05 | 0.075 | 12.7 |
| pfu_aug1.0_11458.1_10325.t1 | 2 | 2 | SNARE | 196 | 254 | 4.3e-11 | 42.3 | 6.1e-12 | 3.0e-08 | 33.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11458.1_10325.t1 | gi|339245433|ref|XP_003378642.1| | SNARE domain protein [Trichinella spiralis] | 8.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11458.1_10325.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11458.1_10325.t1 atggaacaacacagctcaaatcctttttacactgacgaagacgatacaaataatggattctacggcaaaggagggagggg atgggacgaaggggaggagaaacgaaatcgactccaggaccaaatttttgcttcggaggaccgacagatagaatcaagca gacgagcattagcaggtctggccgaatctgaaagtatggggatcagtactgcagaggaacttttacgacaaggggagcaa ctgaaaaacatcgagaggaaaacagccgtgataaatgacaatatgaccacaactcagaaacatctcaacaacataaagag cgtttttggtggtataaaaaactggtggaacaagggtaaaaccgaacagcagacggaggaatcggacgtcaaaccaagca gattacaacagacagtggaaagagaaaaaatgtccagaccgcagcacagaaatgtcgatacatcaggattttatgacaat gataatgatcttgataaaaaatttatggccggtgccaaaacttcgtcatctcataatcagcagtttttcaaacccgtaac gcacagtgcaagggaagagcagataaatgaaaatttaggtatgatgtctgatgggttgtcaagactgaaagatctggccg ttggattaggggacgaaatcgaaagacaaaatgactttatagacgacagaataaagccaggaatcgatcgtgcaaacctg cgattagaagatcaaaacaaacaaatgaacaggattttaagaaaataa |
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Protein
| Protein ID | pfu_aug1.0_11458.1_10325.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11458.1_10325.t1 MEQHSSNPFYTDEDDTNNGFYGKGGRGWDEGEEKRNRLQDQIFASEDRQIESSRRALAGLAESESMGISTAEELLRQGEQ LKNIERKTAVINDNMTTTQKHLNNIKSVFGGIKNWWNKGKTEQQTEESDVKPSRLQQTVEREKMSRPQHRNVDTSGFYDN DNDLDKKFMAGAKTSSSHNQQFFKPVTHSAREEQINENLGMMSDGLSRLKDLAVGLGDEIERQNDFIDDRIKPGIDRANL RLEDQNKQMNRILRK |
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