Gene
Gene Model ID | pfu_aug1.0_11483.1_24900 |
---|---|
Locus | scaffold11483.1 : 46741 ... 65703 : - |
To GenomeBrowser | scaffold11483.1:46741..65703 |
Genes list of scaffold | scaffold11483.1 |
Synonym | pfu_aug2.0_209.1_30421 |
Manual annotation
Study field | signal molecules |
---|---|
Gene name | beta-1,3-N-acetylglucosaminyltransferase radical fringe like |
Description | Best hit Bos taurus fng by NCBI BLAST |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_11483.1_24900.t1 | 2 | 1 | Fringe | 1 | 45 | 0.0 | 247.9 | 1.2e-18 | 6.0e-15 | 55.1 |
pfu_aug1.0_11483.1_24900.t1 | 2 | 2 | Fringe | 67 | 243 | 0.0 | 247.9 | 0.0 | 0.0 | 191.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_11483.1_24900.t1 | gi|345485506|ref|XP_003425285.1| | PREDICTED: fringe glycosyltransferase isoform X1 [Nasonia vitripennis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_11483.1_24900.t1 |
---|---|
Definition | - |
>pfu_aug1.0_11483.1_24900.t1 ttggttttgtcatgtcgacgacgacaattaccttaatgttgaccgattgttaacaatgttaaggaattacgacccctctg agctgtggtatttggggagagcgagtcttgaccaccctgttactccaccagaaagaccgaaactgattacactaggtttc ggtggtaatgttatttcaatcaagggatttgatgttaaagacgatcctactagaagagatttatgttgtaaatttgcgat ggagtacgatcactacataagatcaggaaaaagttggttttgtcatgttgacgatgacaattaccttaatgttgacctac tactacaaatgttaagggggtatgaccccttagagctgtggtatttaggcagagcaagtcgtgatcatccagttacgcca ccaagaaaaaacctgagacatgttaagttttggtttgcaacacttggtgctggtgtctgtattagtaaagctttagcaaa gaaaatgttgccacatgcgagtgatgaaaaatttagcgatgcttgcgatcatactgggatgccggacgattgtactctcg ggtacattatcaatcatcttcttggtgtaaatctcaccactgtcaacaacttccattctcacatggaaattctaaaggac attaaagatccagaaaatcaaattacactaggtttcagtggtaatgttattacaattaagggatttgatgttaaagaaga tccaactaggttcaagtcactgcattgtaaactacatcccaaagtagattattgttcagctctaaaacaaaatattacta attga |
Protein
Protein ID | pfu_aug1.0_11483.1_24900.t1 |
---|---|
Definition | - |
>pfu_aug1.0_11483.1_24900.t1 WFCHVDDDNYLNVDRLLTMLRNYDPSELWYLGRASLDHPVTPPERPKLITLGFGGNVISIKGFDVKDDPTRRDLCCKFAM EYDHYIRSGKSWFCHVDDDNYLNVDLLLQMLRGYDPLELWYLGRASRDHPVTPPRKNLRHVKFWFATLGAGVCISKALAK KMLPHASDEKFSDACDHTGMPDDCTLGYIINHLLGVNLTTVNNFHSHMEILKDIKDPENQITLGFSGNVITIKGFDVKED PTRFKSLHCKLHPKVDYCSALKQNITN |