Gene
| Gene Model ID | pfu_aug1.0_11483.1_24900 |
|---|---|
| Locus | scaffold11483.1 : 46741 ... 65703 : - |
| To GenomeBrowser | scaffold11483.1:46741..65703 |
| Genes list of scaffold | scaffold11483.1 |
| Synonym | pfu_aug2.0_209.1_30421 |
Manual annotation
| Study field | signal molecules |
|---|---|
| Gene name | beta-1,3-N-acetylglucosaminyltransferase radical fringe like |
| Description | Best hit Bos taurus fng by NCBI BLAST |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11483.1_24900.t1 | 2 | 1 | Fringe | 1 | 45 | 0.0 | 247.9 | 1.2e-18 | 6.0e-15 | 55.1 |
| pfu_aug1.0_11483.1_24900.t1 | 2 | 2 | Fringe | 67 | 243 | 0.0 | 247.9 | 0.0 | 0.0 | 191.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11483.1_24900.t1 | gi|345485506|ref|XP_003425285.1| | PREDICTED: fringe glycosyltransferase isoform X1 [Nasonia vitripennis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11483.1_24900.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11483.1_24900.t1 ttggttttgtcatgtcgacgacgacaattaccttaatgttgaccgattgttaacaatgttaaggaattacgacccctctg agctgtggtatttggggagagcgagtcttgaccaccctgttactccaccagaaagaccgaaactgattacactaggtttc ggtggtaatgttatttcaatcaagggatttgatgttaaagacgatcctactagaagagatttatgttgtaaatttgcgat ggagtacgatcactacataagatcaggaaaaagttggttttgtcatgttgacgatgacaattaccttaatgttgacctac tactacaaatgttaagggggtatgaccccttagagctgtggtatttaggcagagcaagtcgtgatcatccagttacgcca ccaagaaaaaacctgagacatgttaagttttggtttgcaacacttggtgctggtgtctgtattagtaaagctttagcaaa gaaaatgttgccacatgcgagtgatgaaaaatttagcgatgcttgcgatcatactgggatgccggacgattgtactctcg ggtacattatcaatcatcttcttggtgtaaatctcaccactgtcaacaacttccattctcacatggaaattctaaaggac attaaagatccagaaaatcaaattacactaggtttcagtggtaatgttattacaattaagggatttgatgttaaagaaga tccaactaggttcaagtcactgcattgtaaactacatcccaaagtagattattgttcagctctaaaacaaaatattacta attga |
|
Protein
| Protein ID | pfu_aug1.0_11483.1_24900.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11483.1_24900.t1 WFCHVDDDNYLNVDRLLTMLRNYDPSELWYLGRASLDHPVTPPERPKLITLGFGGNVISIKGFDVKDDPTRRDLCCKFAM EYDHYIRSGKSWFCHVDDDNYLNVDLLLQMLRGYDPLELWYLGRASRDHPVTPPRKNLRHVKFWFATLGAGVCISKALAK KMLPHASDEKFSDACDHTGMPDDCTLGYIINHLLGVNLTTVNNFHSHMEILKDIKDPENQITLGFSGNVITIKGFDVKED PTRFKSLHCKLHPKVDYCSALKQNITN |
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