Gene
| Gene Model ID | pfu_aug1.0_115.1_07386 |
|---|---|
| Locus | scaffold115.1 : 36514 ... 45885 : - |
| To GenomeBrowser | scaffold115.1:36514..45885 |
| Genes list of scaffold | scaffold115.1 |
| Synonym | pfu_aug2.0_1777.1_25140 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_115.1_07386.t1 | 1 | 1 | zf-rbx1 | 109 | 155 | 1.4e-08 | 34.7 | 1.6e-11 | 1.7e-08 | 34.4 |
| pfu_aug1.0_115.1_07386.t1 | 1 | 1 | zf-RING_2 | 111 | 155 | 6.9e-16 | 57.8 | 6.5e-19 | 6.9e-16 | 57.8 |
| pfu_aug1.0_115.1_07386.t1 | 1 | 1 | zf-C3HC4_3 | 111 | 158 | 3.8e-06 | 26.4 | 8.2e-09 | 8.7e-06 | 25.3 |
| pfu_aug1.0_115.1_07386.t1 | 1 | 1 | zf-C3HC4 | 113 | 154 | 1.2e-08 | 34.5 | 2.3e-11 | 2.4e-08 | 33.4 |
| pfu_aug1.0_115.1_07386.t1 | 1 | 1 | zf-C3HC4_2 | 113 | 154 | 2.7e-07 | 30.5 | 5.5e-10 | 5.8e-07 | 29.4 |
| pfu_aug1.0_115.1_07386.t1 | 1 | 1 | zf-RING_5 | 113 | 156 | 2.0e-06 | 27.4 | 3.5e-09 | 3.7e-06 | 26.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_115.1_07386.t1 | gi|348581670|ref|XP_003476600.1| | PREDICTED: E3 ubiquitin-protein ligase RNF13 [Cavia porcellus] | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug1.0_115.1_07386.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_115.1_07386.t1 atgaagataaactgttcatcagcagtgataaaatttttggcaggaatattaaatgaaacaactccaatttgtacatatga tgtcagtccttcttaccaacgtcacttcaaaagtgacaagtattatatacggatagaaaggaatacatattattacaagc cttacatgctctggccgtttgcagttgttgtgggtacctgtttctttcttatgttattatttatgattttcaaatggata agagatataagaaaaagacgaaagtcaaggttgtcaacaaaacatcttaaaaagataccaacaaaaaaattcaagaaagg ggattcctacgatgtttgtgccatatgcctcgatgattttgaacaaggagataaactaagagtgttgccctgttcacatg cctaccattgcaagtgcattgatccctggctgacaaaacgtaagaagacgtgtccagtttgtaagaggaaggttattccg ggagccaatccggactcggactcagatactgacgagtcaggaacggaagaaacaaatgaaagaacaccactcttggctgg gaacaacaacaatcctgtgatggagactccaaggagatcaacatttgacaactcgggtttacctgagactgtccgggaac agcaggtgtctgtaatacgtgtaactacacagaacaatgactctgactccagcagtgatgaagaggacatcacacagaga ggcgtggccggccccaccctaggagctgtggctggacccagtcatgtagatactaactctgacgttgttagaggagcaga gggagggttggagaaccagggttacacagacgctgaggaggaggaatgtgttgatgatagggatgttaaggttgtggtac ccaacaacctcaaagcaaacaatgaattacatgatatcaaccacgtagtatga |
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Protein
| Protein ID | pfu_aug1.0_115.1_07386.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_115.1_07386.t1 MKINCSSAVIKFLAGILNETTPICTYDVSPSYQRHFKSDKYYIRIERNTYYYKPYMLWPFAVVVGTCFFLMLLFMIFKWI RDIRKRRKSRLSTKHLKKIPTKKFKKGDSYDVCAICLDDFEQGDKLRVLPCSHAYHCKCIDPWLTKRKKTCPVCKRKVIP GANPDSDSDTDESGTEETNERTPLLAGNNNNPVMETPRRSTFDNSGLPETVREQQVSVIRVTTQNNDSDSSSDEEDITQR GVAGPTLGAVAGPSHVDTNSDVVRGAEGGLENQGYTDAEEEECVDDRDVKVVVPNNLKANNELHDINHVV |
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