Gene
| Gene Model ID | pfu_aug1.0_115307.1_57065 |
|---|---|
| Locus | scaffold115307.1 : 1 ... 1237 : + |
| To GenomeBrowser | scaffold115307.1:1..1237 |
| Genes list of scaffold | scaffold115307.1 |
| Synonym | pfu_aug2.0_1259.1_31568 |
Manual annotation
| Study field | 20 basic cell biology |
|---|---|
| Gene name | ubiquitin |
| Description | Indentify to ADB22377.1| ubiquitin [Crassostrea hongkongensis |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_115307.1_57065.t1 | 1 | 1 | ubiquitin | 1 | 39 | 2.4e-18 | 65.2 | 1.0e-21 | 3.1e-18 | 64.9 |
| pfu_aug1.0_115307.1_57065.t1 | 1 | 1 | Rad60-SLD | 1 | 36 | 5.8e-09 | 35.5 | 2.7e-12 | 7.9e-09 | 35.0 |
| pfu_aug1.0_115307.1_57065.t1 | 1 | 1 | Ribosomal_L40e | 43 | 85 | 2.3e-26 | 91.1 | 1.3e-29 | 3.7e-26 | 90.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_115307.1_57065.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_115307.1_57065.t1 gtatccccccagatcaacagaggttgatttttgctggcaagcagcttgaagatggaaggactctatctgactacaatatt cagaaagaatccactctacatttggtactgaggttgagaggcgggatcatcgagcccagtttacgtatcttggccagtaa atacaactgtgacaagatgatttgtagaaagtgctacgcccgtctccaccccagggccacaaactgccgtaagaggaagt gtggacacaccaacaat |
|
Protein
| Protein ID | pfu_aug1.0_115307.1_57065.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_115307.1_57065.t1 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILASKYNCDKMICRKCYARLHPRATNCRKRKC GHTNN |
|