Gene
| Gene Model ID | pfu_aug1.0_1160.1_36844 |
|---|---|
| Locus | scaffold1160.1 : 26186 ... 58368 : + |
| To GenomeBrowser | scaffold1160.1:26186..58368 |
| Genes list of scaffold | scaffold1160.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1160.1_36844.t1 | 1 | 1 | Cation_ATPase_N | 6 | 31 | 1.0e-05 | 24.8 | 3.4e-09 | 2.5e-05 | 23.6 |
| pfu_aug1.0_1160.1_36844.t1 | 3 | 1 | E1-E2_ATPase | 10 | 58 | 1.0e-26 | 93.4 | 0.0024 | 18.0 | 4.2 |
| pfu_aug1.0_1160.1_36844.t1 | 3 | 2 | E1-E2_ATPase | 71 | 149 | 1.0e-26 | 93.4 | 6.6e-21 | 4.9e-17 | 61.7 |
| pfu_aug1.0_1160.1_36844.t1 | 3 | 3 | E1-E2_ATPase | 154 | 219 | 1.0e-26 | 93.4 | 1.9e-12 | 1.4e-08 | 34.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1160.1_36844.t1 | gi|152003983|gb|ABS19815.1| | sarco/endoplasmic reticulum calcium ATPase isoform A [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1160.1_36844.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1160.1_36844.t1 atgtatcatatgggcaagcctttatgggaattaatcttagaacagtttgacgaccttctagtgaagatcttattgttagc agctattatctcatttgttttagcatggtttgaagagagcgaggagcaagtcacagcatttgtagaaccttttgtcattc tcaccatcctcatttgtaacgccgttgtaggagtgtggcaggtgagtccagttggagacaaggttcctgcagacattcgt atcagcaaaattcattccactaccctcaggatagatcaatccatcctcaccggagaaagtgtcagcgtcatcaaacacac cgaccccatccccgaccctagggccgtcaaccaggacaagaaaaatatactcttctctggtacaaacatatctgctggta aatgccgtggtattgttattggaactggccttaacactgaaattgacactaagggtctggtcacctcgttaatcacggtg atcacagtaatttgtgtggctgtatgggcaattaatatcggacattttaacgacccggctcacggtggatcatggatcaa gggcgccatctattacttcaagattgcggtagctttggccgtagcggctatcccagaaggcttgcccgctgtcatcacaa catgtcttgcacttggtcgtgacacattgagatgtttggctttggccaccattgacagcccacccagccgagaagatatg gacctggaagattctaggaaattcattcagtatgagacaacaattattatgaattgtcatattttgctttag |
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Protein
| Protein ID | pfu_aug1.0_1160.1_36844.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1160.1_36844.t1 MYHMGKPLWELILEQFDDLLVKILLLAAIISFVLAWFEESEEQVTAFVEPFVILTILICNAVVGVWQVSPVGDKVPADIR ISKIHSTTLRIDQSILTGESVSVIKHTDPIPDPRAVNQDKKNILFSGTNISAGKCRGIVIGTGLNTEIDTKGLVTSLITV ITVICVAVWAINIGHFNDPAHGGSWIKGAIYYFKIAVALAVAAIPEGLPAVITTCLALGRDTLRCLALATIDSPPSREDM DLEDSRKFIQYETTIIMNCHILL |
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